Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 1.2e-149 533.1 272 100.0
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 3.4e-139 498.4 272 95.2
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.3e-117 426.8 265 85.7
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.8e-56 223.0 236 58.1
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 5.6e-49 198.7 285 45.3
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 3.4e-46 189.5 290 44.1
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 4.4e-46 189.1 285 46.7
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 7.5e-46 188.3 283 46.3
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 7.5e-46 188.3 283 46.3
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 1.7e-45 187.2 242 50.8
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 4.1e-44 182.6 275 44.4
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 1.2e-43 181.0 296 43.6
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 1.2e-43 181.0 297 42.1
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 1.7e-42 177.2 281 43.1
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.5e-41 173.3 271 42.8
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 4.3e-41 172.6 278 43.9
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 5.6e-41 172.2 264 43.2
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.6e-40 170.6 287 44.3
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 6.2e-40 168.7 292 41.4
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 8.1e-40 168.3 292 43.2
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 8.1e-40 168.3 288 42.4
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 1.1e-39 167.9 286 43.0
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 3.1e-39 166.4 291 39.9
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 8.9e-39 164.9 285 42.1
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 8.9e-39 164.9 295 40.3
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 8.9e-39 164.9 293 42.7
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 1.5e-38 164.1 292 40.8
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 2.0e-38 163.7 280 40.4
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 4.4e-38 162.5 331 37.2
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 1.1e-36 157.9 305 38.4
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.4e-36 157.5 287 42.2
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 1.4e-36 157.5 279 39.4
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 1.9e-36 157.1 284 41.5
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 1.9e-36 157.1 287 38.7
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 2.4e-36 156.8 253 41.9
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 5.4e-36 155.6 292 39.7
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.2e-35 154.5 284 41.9
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.6e-35 154.1 291 41.2
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 2.1e-35 153.7 282 39.0
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 4.6e-35 152.5 287 41.8
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 6.6e-34 148.7 302 36.8
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 8.6e-34 148.3 184 51.1
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 1.5e-33 147.5 187 50.3
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 9.6e-33 144.8 282 39.7
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 9.6e-33 144.8 208 43.3
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 1.6e-32 144.1 291 37.1
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.1e-32 143.7 312 36.9
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 3.6e-32 142.9 187 49.2
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 4.7e-32 142.5 301 35.5
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 8.1e-32 141.7 288 37.8
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 3.1e-31 139.8 262 40.5
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.5e-30 137.5 315 34.9
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 1.3e-29 134.4 281 35.9
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.1e-28 131.3 297 34.3
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.4e-28 131.0 181 45.9
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 2.4e-28 130.2 283 38.5
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 5.4e-28 129.0 181 44.2
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 7.1e-28 128.6 175 45.7
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 2.1e-27 127.1 292 34.9
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 2.1e-27 127.1 275 36.4
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 2.1e-27 127.1 283 35.3
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 7.8e-27 125.2 185 43.8
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 7.8e-27 125.2 210 41.0
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 1.7e-26 124.0 177 46.3
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 2.3e-26 123.6 274 31.0
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 3.9e-26 122.9 293 37.2
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 5.1e-26 122.5 192 39.1
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 5.1e-26 122.5 295 36.6
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 6.6e-26 122.1 280 36.1
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 8.7e-26 121.7 159 48.4
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 1.1e-25 121.3 188 43.1
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.5e-25 120.2 292 35.6
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 2.8e-24 116.7 247 35.2
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 2.8e-24 116.7 187 41.2
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 2.4e-23 113.6 182 44.5
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 2.4e-23 113.6 272 30.9
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 3.1e-23 113.2 147 44.9
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 9.0e-23 111.7 161 45.3
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 2.0e-22 110.5 177 42.4
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 9.9e-22 108.2 275 31.6
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 3.8e-21 106.3 278 33.1
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 1.4e-20 104.4 300 31.3
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 4.2e-20 102.8 211 38.9
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 5.4e-20 102.4 286 34.6
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 5.4e-20 102.4 183 41.0
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 7.1e-20 102.1 187 38.5
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 1.3e-18 97.8 277 32.1
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 1.1e-17 94.7 110 50.9
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.1e-17 94.7 270 29.6
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 1.5e-17 94.4 283 30.0
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 1.5e-17 94.4 283 30.0
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 1.5e-17 94.4 188 35.6
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.5e-17 94.4 117 53.0
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 1.9e-17 94.0 138 42.8
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 2.5e-17 93.6 276 31.2
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 3.3e-17 93.2 288 30.6
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 4.3e-17 92.8 157 38.2
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 7.4e-17 92.0 276 30.4
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 6.2e-16 89.0 259 33.6
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 1.4e-15 87.8 287 31.7
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 3.1e-15 86.7 179 38.5
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 4.0e-15 86.3 211 36.0
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 1.2e-14 84.7 163 38.7
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.2e-14 84.7 206 32.5
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 2.2e-13 80.5 190 33.2
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.4e-12 77.0 126 38.1
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 3.2e-12 76.6 271 29.9
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 5.5e-12 75.9 188 35.1
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 6.0e-11 72.4 282 25.9
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 3.0e-10 70.1 71 54.9
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 1.9e-09 67.4 222 31.1
SalBow2G2623 Salvia bowleyana HOM05D000347 ORTHO05D008062 2.5e-09 67.0 278 28.4
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 3.3e-09 66.6 110 39.1
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 5.6e-09 65.9 155 36.8
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 2.1e-08 63.9 222 29.7
Nitab4.5_0006773g0040 Nicotiana tabacum HOM05D000347 ORTHO05D008062 4.8e-08 62.8 104 39.4
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 9.0e-07 58.5 148 31.8


User provided reference genes

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