Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.8e-310 1067.8 536 100.0
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.5e-303 1045.4 536 97.9
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.3e-296 1021.5 536 95.3
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 2.1e-278 961.8 542 90.0
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 8.2e-254 880.2 543 84.5
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.4e-245 852.8 562 80.6
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.1e-221 773.5 462 85.3
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 8.6e-219 763.8 545 73.4
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 3.6e-217 758.4 545 73.4
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 6.1e-217 757.7 544 72.8
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 5.0e-211 738.0 549 70.1
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 3.3e-210 735.3 550 70.2
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 7.3e-202 707.6 552 66.7
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 3.6e-201 705.3 544 69.5
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 4.0e-200 701.8 554 68.6
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 8.9e-200 700.7 555 67.7
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.6e-199 699.1 540 68.5
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.7e-198 696.4 550 68.0
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 8.3e-198 694.1 556 66.9
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.4e-197 692.6 554 67.5
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.4e-197 692.6 682 57.9
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.2e-196 690.3 556 66.5
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.7e-196 689.1 556 66.5
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 6.0e-196 688.0 551 67.5
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.3e-195 686.8 557 66.6
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.7e-195 686.4 542 67.9
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.9e-195 685.3 681 58.1
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.1e-194 683.7 545 67.7
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 1.5e-194 683.3 550 65.1
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 7.3e-194 681.0 545 67.5
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 3.6e-193 678.7 555 66.3
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.8e-192 676.4 558 65.8
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.8e-192 676.4 556 66.0
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 4.0e-192 675.2 554 65.3
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.2e-191 673.7 554 66.1
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.6e-191 672.5 552 65.2
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 2.9e-190 669.1 557 65.2
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 2.9e-190 669.1 554 65.2
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 2.9e-190 669.1 553 64.7
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.8e-190 668.7 557 66.1
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.8e-190 668.7 553 64.6
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.4e-189 666.8 546 66.1
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.9e-189 666.4 547 65.4
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.4e-189 666.0 554 65.2
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 5.4e-189 664.8 561 64.7
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 9.2e-189 664.1 558 64.0
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.0e-187 660.6 554 65.2
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.3e-187 659.4 556 64.2
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 8.6e-187 657.5 515 67.8
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.6e-185 653.3 631 60.2
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 2.1e-185 652.9 554 64.1
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 4.7e-185 651.7 602 59.8
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.8e-184 649.8 550 63.6
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 3.4e-183 645.6 546 64.3
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 3.8e-182 642.1 602 61.1
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 3.8e-182 642.1 550 63.3
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 7.1e-181 637.9 626 57.8
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 2.7e-180 636.0 552 64.1
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 3.5e-180 635.6 552 64.3
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 2.3e-179 632.9 550 62.2
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.0e-179 632.5 576 61.3
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 5.1e-179 631.7 554 64.3
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.1e-178 630.6 546 64.7
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.5e-178 630.2 576 61.5
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.3e-178 629.0 516 66.7
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 5.6e-178 628.2 550 62.7
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 9.6e-178 627.5 546 62.6
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.1e-177 626.3 552 62.5
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 2.8e-177 625.9 551 63.2
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.4e-176 623.6 553 62.4
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.4e-176 623.6 547 62.5
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.3e-174 617.1 583 58.5
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.3e-174 617.1 551 62.1
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 4.9e-174 615.1 553 61.7
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 2.4e-173 612.8 563 60.7
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 3.0e-171 605.9 556 61.2
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 8.7e-171 604.4 548 60.0
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 4.8e-169 598.6 536 62.1
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 1.1e-168 597.4 531 61.0
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 9.0e-168 594.3 538 61.5
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.1e-165 587.4 580 57.2
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.4e-165 586.3 570 58.9
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 8.7e-163 577.8 543 59.3
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.6e-161 573.5 466 64.4
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 3.7e-161 572.4 554 59.6
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.8e-160 570.1 564 58.7
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 1.5e-159 567.0 537 60.0
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 2.6e-159 566.2 565 57.3
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.3e-158 563.9 551 59.5
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 7.1e-157 558.1 558 58.4
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.2e-156 557.4 515 60.8
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 3.5e-156 555.8 539 59.9
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.0e-155 552.7 569 57.3
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 6.7e-155 551.6 563 57.0
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 1.5e-154 550.4 568 56.7
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 3.3e-154 549.3 562 57.3
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 5.7e-154 548.5 451 65.2
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 9.6e-154 547.7 557 57.1
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 3.7e-153 545.8 563 56.5
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.7e-150 537.0 559 56.4
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 2.6e-143 513.1 561 55.4
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 2.6e-143 513.1 561 55.4
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.3e-142 510.8 561 55.3
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 2.2e-142 510.0 560 55.5
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 8.5e-142 508.1 560 55.2
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 2.2e-134 483.4 424 62.3
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 6.5e-134 481.9 563 51.9
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 4.2e-133 479.2 484 58.7
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 4.8e-129 465.7 583 48.5
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.6e-127 460.7 555 50.6
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 7.7e-127 458.4 419 60.9
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 7.5e-122 441.8 555 50.5
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 9.7e-122 441.4 547 49.9
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 5.3e-120 435.6 359 63.5
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.5e-117 425.6 516 50.8
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 4.1e-96 356.3 357 57.4
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 9.2e-96 355.1 546 42.9
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 8.9e-91 338.6 563 40.7
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 6.4e-73 279.3 303 51.2
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 3.3e-69 266.9 302 51.7
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 9.0e-51 205.7 260 44.2
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.4e-48 198.4 468 35.3
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.0e-34 151.4 185 51.9
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 2.6e-26 124.4 79 77.2
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 8.2e-20 102.8 226 29.2
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.1e-19 102.4 83 62.7
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.5e-18 98.6 112 54.5
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 7.7e-18 96.3 84 60.7
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.5e-17 93.2 78 62.8
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.4e-16 92.0 216 32.9
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.5e-16 90.1 225 29.8
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 6.1e-15 86.7 204 33.3
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 2.0e-13 81.6 219 31.5
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 6.7e-06 56.6 60 53.3


User provided reference genes

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