Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 7.0e-93 344.0 177 100.0
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 7.8e-76 287.3 161 92.5
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 6.6e-75 284.3 161 91.9
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 7.1e-53 211.1 173 64.2
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.1e-51 204.9 173 63.0
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.7e-38 163.3 193 47.7
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.7e-38 163.3 193 47.7
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.1e-37 160.6 165 55.8
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.0e-35 154.1 200 45.0
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.0e-35 154.1 154 54.5
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 9.6e-34 147.5 204 44.1
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.8e-32 143.3 142 54.9
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 5.8e-31 138.3 149 55.0
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.1e-29 134.0 193 42.0
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-27 125.6 233 39.9
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.7e-27 124.4 141 54.6
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 1.5e-26 123.6 131 51.1
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 4.3e-26 122.1 145 50.3
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 5.6e-26 121.7 151 51.0
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 2.8e-25 119.4 123 55.3
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 4.8e-25 118.6 123 52.0
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 8.1e-25 117.9 139 50.4
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 1.1e-24 117.5 121 53.7
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.4e-24 117.1 134 45.5
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.8e-24 116.7 202 40.1
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 2.4e-24 116.3 130 53.1
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 2.4e-24 116.3 124 48.4
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 2.4e-24 116.3 122 53.3
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 4.0e-24 115.5 121 53.7
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 9.0e-24 114.4 121 53.7
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 9.0e-24 114.4 170 42.9
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.5e-23 113.6 122 50.0
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.5e-23 113.6 140 45.7
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 2.0e-23 113.2 193 42.5
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.4e-23 112.5 141 48.2
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.4e-23 112.5 195 42.1
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.5e-23 112.1 170 40.6
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 5.8e-23 111.7 115 53.9
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 5.8e-23 111.7 168 42.3
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 5.8e-23 111.7 120 50.0
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 7.6e-23 111.3 120 51.7
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 7.6e-23 111.3 122 54.1
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 7.6e-23 111.3 120 50.0
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.7e-22 110.2 126 50.8
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.7e-22 110.2 128 49.2
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.7e-22 110.2 120 50.0
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.7e-22 110.2 120 50.0
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 2.9e-22 109.4 122 50.0
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 3.8e-22 109.0 121 49.6
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.9e-22 108.6 127 49.6
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 6.5e-22 108.2 119 52.1
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 8.4e-22 107.8 128 48.4
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 8.4e-22 107.8 111 54.1
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.1e-21 107.5 118 50.8
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.5e-21 106.3 116 49.1
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 5.5e-21 105.1 134 50.0
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 9.3e-21 104.4 119 46.2
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 9.3e-21 104.4 118 48.3
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.2e-20 104.0 119 50.4
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 1.2e-20 104.0 129 45.7
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.7e-20 102.8 182 39.6
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 3.5e-20 102.4 117 45.3
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 4.6e-20 102.1 148 44.6
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 4.6e-20 102.1 147 47.6
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 1.3e-19 100.5 118 46.6
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-19 100.5 133 48.1
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 2.3e-19 99.8 126 47.6
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.0e-19 99.4 182 38.5
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 5.1e-19 98.6 117 48.7
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 8.7e-19 97.8 137 40.1
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.5e-18 96.3 131 44.3
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.5e-18 96.3 131 44.3
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.5e-18 96.3 131 44.3
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 2.5e-18 96.3 131 45.8
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 3.3e-18 95.9 136 42.6
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 4.3e-18 95.5 138 39.9
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 4.3e-18 95.5 149 40.3
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 4.3e-18 95.5 171 40.4
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 4.3e-18 95.5 119 44.5
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 7.4e-18 94.7 129 48.8
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 7.4e-18 94.7 129 47.3
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 7.4e-18 94.7 117 45.3
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.8e-17 92.8 131 43.5
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.8e-17 92.8 151 41.7
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 3.7e-17 92.4 133 39.1
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.7e-17 92.4 133 44.4
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 4.8e-17 92.0 124 41.1
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.8e-17 92.0 122 46.7
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.8e-17 92.0 122 46.7
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 4.8e-17 92.0 152 40.1
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.2e-17 91.7 131 43.5
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.1e-16 90.9 129 42.6
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.1e-16 89.4 136 43.4
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 5.3e-16 88.6 166 39.8
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 6.9e-16 88.2 126 46.8
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 6.9e-16 88.2 171 38.0
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 1.5e-15 87.0 117 47.0
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 2.6e-15 86.3 131 41.2
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 2.6e-15 86.3 127 44.1
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 4.5e-15 85.5 139 43.2
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.0e-14 84.3 164 40.2
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 2.9e-14 82.8 130 43.1
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 3.8e-14 82.4 179 36.3
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 3.8e-14 82.4 179 36.3
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 3.8e-14 82.4 179 36.3
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 6.5e-14 81.6 146 37.7
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.1e-13 80.9 129 41.9
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.4e-13 80.5 146 38.4
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.9e-13 80.1 124 44.4
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 2.5e-13 79.7 169 36.1
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 4.2e-13 79.0 156 34.0
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 5.5e-13 78.6 108 49.1
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 7.2e-13 78.2 161 37.3
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 7.2e-13 78.2 120 36.7
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.6e-12 77.0 129 40.3
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.6e-12 77.0 149 37.6
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 2.1e-12 76.6 122 40.2
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.7e-12 76.3 140 37.9
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 7.9e-12 74.7 163 36.8
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 7.9e-12 74.7 129 39.5
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 1.8e-11 73.6 142 35.9
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 5.1e-11 72.0 59 55.9
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 6.7e-11 71.6 111 43.2
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 8.7e-11 71.2 121 38.0
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 3.3e-10 69.3 143 35.7
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 3.3e-10 69.3 159 34.0
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 2.4e-08 63.2 142 32.4
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.7e-06 57.0 159 34.0
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 2.2e-06 56.6 107 38.3


User provided reference genes

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