Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 0.0e+00 1210.7 616 100.0
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 0.0e+00 1204.1 616 99.4
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 0.0e+00 1157.1 615 95.0
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 0.0e+00 1106.7 614 92.3
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 0.0e+00 1104.7 599 93.8
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 0.0e+00 1099.3 615 91.7
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 0.0e+00 1089.7 601 92.5
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 0.0e+00 1085.1 615 90.1
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 6.2e-290 1000.3 614 81.1
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.0e-287 993.0 616 80.8
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 9.3e-286 986.5 615 80.8
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 8.2e-282 973.4 640 76.7
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 5.3e-281 970.7 615 80.3
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 3.4e-280 968.0 615 78.7
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 4.5e-280 967.6 615 79.3
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.9e-279 964.9 615 78.5
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 5.0e-279 964.1 615 78.5
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 6.5e-279 963.8 615 78.2
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.1e-278 963.0 615 77.7
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.4e-278 962.6 615 79.0
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.1e-277 958.7 616 78.4
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 3.6e-277 958.0 615 78.9
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.6e-277 957.6 616 77.4
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 6.1e-277 957.2 615 78.0
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 6.1e-277 957.2 615 78.0
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 3.9e-276 954.5 615 78.2
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 3.9e-276 954.5 615 77.2
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 8.8e-276 953.4 615 77.7
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 1.5e-275 952.6 615 77.1
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 3.3e-275 951.4 614 77.2
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 7.4e-275 950.3 619 77.9
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 1.3e-274 949.5 615 77.9
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.7e-274 949.1 654 74.3
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 2.2e-274 948.7 615 76.9
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 6.3e-274 947.2 615 76.6
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 8.2e-274 946.8 616 76.9
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 3.1e-273 944.9 614 77.2
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 4.1e-273 944.5 616 77.1
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.5e-272 942.6 614 77.4
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.4e-272 941.4 624 75.8
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 3.4e-272 941.4 614 76.5
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 1.0e-271 939.9 615 76.6
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.7e-271 939.1 616 76.9
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.2e-269 932.9 615 75.8
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 2.7e-269 931.8 614 76.1
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 4.7e-269 931.0 608 75.7
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.9e-269 930.2 625 75.0
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.3e-267 924.9 615 75.9
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.4e-265 918.7 615 75.0
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 4.1e-265 917.9 615 74.8
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.2e-264 916.4 610 74.6
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.0e-264 915.6 615 74.6
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 2.0e-264 915.6 610 74.4
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 2.6e-264 915.2 615 75.1
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 7.7e-264 913.7 614 74.8
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 7.7e-264 913.7 615 75.0
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 7.7e-264 913.7 750 65.2
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.3e-263 912.9 610 74.6
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 1.7e-263 912.5 615 75.6
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 8.5e-263 910.2 574 79.3
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.1e-262 909.8 615 74.6
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.9e-262 909.1 615 74.5
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.9e-262 909.1 615 74.5
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 4.2e-262 907.9 615 74.6
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 5.5e-262 907.5 642 71.3
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.2e-261 906.4 616 74.5
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 2.1e-261 905.6 615 74.3
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 3.6e-261 904.8 615 74.5
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 6.1e-261 904.0 615 74.3
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 1.8e-260 902.5 681 69.0
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 9.7e-259 896.7 648 71.0
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 8.2e-258 893.6 615 73.0
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.4e-257 892.9 628 71.8
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.6e-256 889.4 541 81.3
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.0e-256 889.0 615 73.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 5.9e-256 887.5 614 72.8
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 2.9e-255 885.2 620 72.1
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 6.5e-255 884.0 613 73.1
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 3.2e-254 881.7 620 71.6
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.8e-252 875.9 615 72.7
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.6e-248 862.8 631 70.2
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.5e-247 857.1 615 70.6
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 9.4e-246 853.6 637 68.9
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.2e-245 853.2 582 73.9
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.8e-244 849.4 615 68.9
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.6e-240 836.3 516 79.7
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 1.6e-240 836.3 516 79.8
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 9.5e-238 827.0 617 67.1
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 2.1e-229 799.3 615 67.2
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 3.7e-226 788.5 574 70.0
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 7.0e-225 784.3 618 64.2
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.2e-224 783.5 620 66.0
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.8e-220 767.7 468 80.8
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 9.8e-219 763.8 511 75.7
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 2.3e-207 726.1 529 71.8
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.7e-202 709.9 617 57.1
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 2.9e-202 709.1 443 79.0
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.1e-201 707.2 557 66.8
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 3.9e-199 698.7 621 56.8
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.1e-188 664.1 616 55.2
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.8e-172 610.1 646 49.1
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 6.5e-154 548.5 618 48.2
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 2.5e-153 546.6 358 77.4
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 2.9e-146 523.1 359 74.9
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.2e-144 517.7 616 45.5
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.0e-143 513.1 484 59.5
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.2e-142 511.1 339 77.0
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 5.0e-138 495.7 364 68.1
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 6.1e-136 488.8 388 65.5
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 8.3e-117 425.2 510 44.5
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 7.0e-116 422.2 597 43.6
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 4.1e-108 396.4 374 59.9
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.1e-99 367.5 282 68.1
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 3.4e-94 350.1 454 48.5
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 5.3e-71 273.1 175 78.3
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 2.9e-69 267.3 171 78.4
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.1e-67 261.2 186 68.3
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.8e-56 223.4 133 81.2
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 4.1e-47 193.7 117 78.6
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.2e-45 188.0 140 68.6
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 5.0e-45 186.8 150 62.0
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 2.5e-44 184.5 122 75.4
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 9.4e-44 182.6 149 63.8
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.2e-43 182.2 105 79.0
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.6e-43 181.8 145 62.1
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 3.0e-42 177.6 106 78.3
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.7e-35 153.7 178 48.3
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 5.3e-31 140.2 86 82.6
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 5.3e-31 140.2 128 61.7
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 4.7e-27 127.1 59 96.6
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 4.7e-27 127.1 59 96.6
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-25 122.5 102 61.8
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.2e-24 118.2 107 52.3
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.4e-23 114.8 84 70.2
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.7e-21 108.6 58 81.0
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 2.5e-20 104.8 78 61.5
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 8.0e-19 99.8 117 57.3
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 8.0e-19 99.8 59 72.9
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 9.8e-17 92.8 76 65.8
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 1.7e-16 92.0 69 58.0
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 2.4e-15 88.2 50 78.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 6.5e-13 80.1 71 57.7
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 4.7e-11 73.9 80 48.8
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 6.8e-10 70.1 51 54.9
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 4.4e-09 67.4 46 76.1
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.4e-09 67.4 54 57.4
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.9e-08 63.9 38 71.1


User provided reference genes

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