Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.0e-125 453.4 222 100.0
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 8.7e-125 450.3 222 99.1
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 4.3e-124 448.0 222 98.2
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.9e-116 422.5 222 91.0
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.4e-114 416.4 222 88.3
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.8e-114 416.0 222 87.8
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 6.9e-114 414.1 222 86.0
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 6.9e-98 360.9 222 73.9
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.8e-90 336.3 214 74.3
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 4.1e-90 335.1 223 70.9
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 1.3e-88 330.1 216 73.6
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 6.5e-88 327.8 216 72.7
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 8.5e-88 327.4 216 70.8
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 8.5e-88 327.4 214 68.7
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 8.5e-88 327.4 214 68.7
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 5.5e-87 324.7 216 73.1
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 7.2e-87 324.3 223 70.0
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.4e-85 320.1 216 69.4
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 5.1e-85 318.2 218 72.0
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 8.8e-85 317.4 224 68.8
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.1e-84 317.0 211 71.6
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.5e-84 316.6 224 68.8
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 2.6e-84 315.8 222 68.0
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.7e-83 313.2 221 68.3
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 2.2e-83 312.8 217 66.8
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 4.8e-83 311.6 223 69.1
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 8.2e-83 310.8 218 67.9
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.4e-82 310.1 220 66.8
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.4e-82 309.3 220 67.7
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 3.1e-82 308.9 216 66.7
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 5.3e-82 308.1 215 68.8
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 7.0e-82 307.8 218 67.0
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 1.6e-81 306.6 220 67.7
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.6e-81 305.8 220 67.3
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 5.9e-81 304.7 215 67.0
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.0e-80 303.9 214 69.2
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.2e-80 302.8 210 68.1
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.9e-80 302.4 210 68.1
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.9e-80 302.4 217 69.1
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 3.8e-80 302.0 217 66.4
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 3.8e-80 302.0 210 68.1
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 5.0e-80 301.6 214 67.3
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 5.0e-80 301.6 220 68.6
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 6.5e-80 301.2 221 66.5
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.1e-79 300.4 212 64.6
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.5e-79 300.1 216 68.1
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 5.5e-79 298.1 217 65.4
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 9.4e-79 297.4 222 64.0
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.2e-78 297.0 216 67.1
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.2e-78 297.0 210 67.1
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.6e-78 296.6 222 63.1
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 2.1e-78 296.2 210 68.1
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.1e-78 296.2 206 67.5
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 2.7e-78 295.8 219 65.3
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 6.1e-78 294.7 220 62.3
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 6.1e-78 294.7 210 65.2
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.0e-77 293.9 210 66.2
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.0e-77 293.9 214 64.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.8e-77 293.1 217 65.0
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.0e-77 292.4 210 67.1
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 5.2e-77 291.6 219 66.2
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.5e-76 290.0 220 61.4
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.5e-76 290.0 218 64.2
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 2.6e-76 289.3 214 65.4
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 3.3e-76 288.9 210 66.7
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 5.7e-76 288.1 217 63.6
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 7.5e-76 287.7 221 63.8
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 9.7e-76 287.3 214 64.0
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 1.3e-75 287.0 218 63.8
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.2e-75 286.2 218 60.1
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 2.8e-75 285.8 218 63.3
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.8e-75 285.8 211 64.9
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 3.7e-75 285.4 216 64.4
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 3.7e-75 285.4 218 63.8
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 4.8e-75 285.0 215 62.3
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 6.3e-75 284.6 214 64.5
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.1e-74 283.9 215 63.3
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.4e-74 283.5 218 63.3
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.4e-74 283.5 218 63.3
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.4e-74 283.5 214 62.1
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 2.0e-73 279.6 215 63.3
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 2.0e-73 279.6 214 63.6
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 2.7e-73 279.3 215 62.8
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 5.9e-73 278.1 204 64.2
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.3e-72 276.9 204 63.7
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.3e-72 276.9 208 63.5
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 1.7e-72 276.6 214 60.7
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.9e-72 275.8 218 60.1
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 4.2e-71 271.9 219 62.6
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 5.5e-71 271.6 195 65.1
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 5.5e-71 271.6 216 63.0
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 9.4e-71 270.8 215 59.1
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.2e-70 270.4 201 63.2
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 8.0e-70 267.7 273 52.7
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.3e-69 266.2 214 57.5
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 2.3e-69 266.2 221 58.8
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.0e-69 265.8 212 59.9
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 6.8e-69 264.6 213 60.1
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 9.8e-68 260.8 216 61.6
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 9.8e-68 260.8 212 58.0
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 2.8e-67 259.2 188 64.4
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 2.7e-65 252.7 162 72.2
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 1.0e-64 250.8 221 58.4
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.2e-63 245.7 198 57.1
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.2e-63 245.7 198 57.1
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 4.2e-63 245.4 207 58.5
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 5.5e-63 245.0 221 57.9
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 4.7e-62 241.9 181 64.6
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 8.0e-62 241.1 175 67.4
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 1.4e-61 240.4 186 64.0
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 3.0e-61 239.2 171 66.7
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 5.2e-61 238.4 197 60.9
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 6.8e-61 238.0 214 55.6
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 1.7e-59 233.4 173 63.6
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 2.8e-59 232.6 218 52.3
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.4e-58 229.6 212 53.8
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 9.2e-58 227.6 171 62.6
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.2e-57 227.3 168 63.1
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.0e-57 226.5 214 54.7
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.7e-57 226.1 214 51.4
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.7e-56 223.4 214 50.9
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.3e-56 223.0 204 54.4
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 3.8e-56 222.2 205 50.2
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 3.3e-55 219.2 205 58.5
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.6e-54 216.9 211 51.2
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 2.1e-54 216.5 220 53.6
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.5e-52 210.3 165 64.8
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.0e-52 209.9 216 53.2
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 5.7e-52 208.4 155 65.2
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.3e-51 207.2 198 50.5
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.9e-51 206.1 219 45.2
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.0e-48 197.6 217 52.5
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.3e-48 197.2 144 64.6
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 9.8e-44 181.0 217 49.8
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.2e-43 179.9 152 52.6
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.1e-42 175.6 203 47.3
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 2.7e-41 172.9 206 43.7
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 6.0e-41 171.8 214 46.3
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 3.0e-40 169.5 109 71.6
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 5.6e-39 165.2 219 40.2
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 4.9e-35 152.1 202 43.1
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 1.1e-34 151.0 95 70.5
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 2.4e-34 149.8 184 41.8
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 3.5e-33 146.0 103 69.9
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.6e-32 141.7 126 55.6
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-31 140.6 216 38.0
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 7.3e-31 138.3 128 49.2
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 9.5e-31 137.9 100 63.0
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 1.4e-29 134.0 212 37.3
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.4e-28 129.0 184 40.2
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.4e-26 122.1 175 44.0
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 8.9e-21 104.8 82 58.5
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.2e-20 104.4 82 58.5
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 1.4e-18 97.4 215 34.9
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.6e-14 82.8 65 64.6
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.5e-12 77.4 81 48.1
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 1.6e-09 67.4 51 64.7
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 1.0e-08 64.7 49 61.2
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.6e-06 57.4 45 62.2


User provided reference genes

Program Settings