Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 8.8e-90 333.6 165 100.0
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 5.3e-87 324.3 166 98.2
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 3.5e-86 321.6 166 97.0
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 5.2e-74 281.2 169 85.8
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 8.9e-66 253.8 171 78.4
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 7.5e-65 250.8 171 77.2
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 9.2e-63 243.8 171 76.0
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.4e-49 198.7 171 65.5
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 5.8e-49 198.0 170 64.1
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 8.6e-45 184.1 173 61.3
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 1.3e-40 170.2 175 56.0
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 3.5e-38 162.2 168 56.0
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 6.6e-37 157.9 179 52.0
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 2.5e-36 156.0 169 53.8
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 3.3e-36 155.6 161 55.3
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 2.1e-35 152.9 179 53.1
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 2.1e-35 152.9 179 53.1
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 3.6e-35 152.1 151 55.0
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 6.9e-34 147.9 164 52.4
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.2e-33 147.1 170 51.8
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.5e-33 146.7 169 51.5
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 2.6e-33 146.0 209 44.0
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 6.4e-32 141.4 174 51.7
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 1.1e-31 140.6 174 48.9
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 1.2e-30 137.1 174 49.4
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 1.6e-30 136.7 151 52.3
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 7.8e-30 134.4 161 50.3
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 1.7e-29 133.3 163 49.1
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 1.1e-28 130.6 173 48.6
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 1.5e-28 130.2 153 54.2
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 1.5e-28 130.2 170 48.2
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 2.5e-28 129.4 171 48.5
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 9.6e-28 127.5 166 46.4
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 1.6e-27 126.7 178 46.1
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 2.1e-27 126.3 173 46.8
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.8e-27 125.9 171 46.2
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 2.8e-27 125.9 155 49.7
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 4.8e-27 125.2 171 46.2
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 6.2e-27 124.8 173 45.1
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 8.1e-27 124.4 171 46.2
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.8e-26 123.2 172 44.8
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 2.4e-26 122.9 169 45.6
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 2.4e-26 122.9 139 54.0
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 3.1e-26 122.5 168 45.2
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 3.1e-26 122.5 172 44.2
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 4.0e-26 122.1 172 44.8
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.0e-26 122.1 172 44.8
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.0e-26 122.1 172 44.8
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 9.0e-26 120.9 169 47.3
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 1.2e-25 120.6 169 46.2
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 2.0e-25 119.8 171 46.2
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 2.6e-25 119.4 169 44.4
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 3.4e-25 119.0 175 45.7
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 4.5e-25 118.6 166 46.4
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.7e-24 116.7 133 51.1
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 2.2e-24 116.3 172 43.6
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 3.8e-24 115.5 161 46.0
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 4.9e-24 115.2 157 46.5
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 8.4e-24 114.4 199 42.7
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 8.4e-24 114.4 157 45.2
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 8.4e-24 114.4 141 49.6
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 1.1e-23 114.0 159 44.7
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.4e-23 113.6 147 43.5
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 7.1e-23 111.3 166 44.6
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 9.3e-23 110.9 185 40.5
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 2.7e-22 109.4 144 42.4
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.5e-22 109.0 163 42.3
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 6.0e-22 108.2 172 43.0
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 1.0e-21 107.5 152 45.4
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 1.8e-21 106.7 95 55.8
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 3.0e-21 105.9 74 68.9
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.9e-21 105.5 159 41.5
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 5.1e-21 105.1 158 41.8
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 6.7e-21 104.8 151 44.4
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 8.7e-21 104.4 144 44.4
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 1.5e-20 103.6 166 43.4
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 1.9e-20 103.2 163 41.1
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 2.5e-20 102.8 137 46.0
Hma1.2p1_1756F.1_g301045 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 2.5e-20 102.8 105 56.2
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 4.3e-20 102.1 105 53.3
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 1.6e-19 100.1 156 41.7
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 2.1e-19 99.8 216 38.0
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 2.8e-19 99.4 216 36.6
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 8.1e-19 97.8 128 46.9
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 8.1e-19 97.8 125 48.0
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 1.1e-18 97.4 162 43.8
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 1.1e-18 97.4 115 47.8
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.8e-18 96.7 128 45.3
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 6.9e-18 94.7 159 40.9
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 6.9e-18 94.7 162 43.2
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 6.9e-18 94.7 97 58.8
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 1.2e-17 94.0 143 40.6
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 3.4e-17 92.4 147 40.8
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 2.9e-16 89.4 148 42.6
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 6.4e-16 88.2 124 41.9
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 6.4e-16 88.2 105 48.6
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 1.1e-15 87.4 136 41.9
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.4e-15 87.0 133 43.6
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.2e-14 84.0 128 45.3
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 1.6e-14 83.6 126 43.7
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 2.7e-14 82.8 88 54.5
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 6.0e-14 81.6 146 37.0
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.8e-13 80.1 119 43.7
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 3.0e-13 79.3 118 41.5
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 3.0e-13 79.3 124 38.7
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 5.1e-13 78.6 124 39.5
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 5.1e-13 78.6 124 39.5
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 1.9e-12 76.6 124 37.1
Solyc09g018900.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 2.4e-10 69.7 44 75.0
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 3.1e-10 69.3 142 36.6
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 1.5e-09 67.0 86 38.4
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 2.0e-09 66.6 105 39.0
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.3e-08 63.9 152 27.6
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 5.5e-07 58.5 80 46.2
Thhalv10005690m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 7.1e-07 58.2 82 46.3
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 9.3e-07 57.8 81 40.7
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 6.0e-06 55.1 126 32.5


User provided reference genes

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