Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 2.3e-276 954.9 477 100.0
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 3.7e-258 894.4 453 98.0
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 6.6e-255 883.6 453 96.9
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.8e-237 825.1 453 89.2
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 7.9e-232 807.0 453 88.3
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 6.3e-205 717.6 454 80.6
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.7e-192 674.9 444 77.0
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.6e-184 649.8 395 78.2
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 2.7e-184 649.0 395 78.2
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 5.2e-183 644.8 471 67.5
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 8.8e-183 644.0 469 69.1
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.5e-182 643.3 470 67.7
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 2.7e-179 632.5 460 68.7
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.0e-175 619.0 458 66.8
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 4.0e-175 618.6 457 66.3
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.2e-174 617.1 380 76.8
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.5e-174 616.7 470 65.1
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 3.7e-173 612.1 405 71.6
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 6.3e-173 611.3 474 63.3
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 4.1e-172 608.6 467 66.0
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 4.1e-172 608.6 454 65.9
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 5.4e-172 608.2 454 66.7
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 9.1e-172 607.4 473 65.3
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.6e-171 606.7 456 65.8
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.0e-171 606.3 471 66.0
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.7e-171 605.9 426 70.0
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 3.5e-171 605.5 461 66.6
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 3.5e-171 605.5 463 64.6
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 4.5e-171 605.1 458 64.6
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 4.5e-171 605.1 472 64.4
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 7.7e-171 604.4 454 66.1
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.7e-170 603.2 462 64.3
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 2.2e-170 602.8 459 66.4
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.9e-170 602.4 456 65.6
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 5.0e-170 601.7 472 65.5
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 5.0e-170 601.7 456 66.0
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 5.0e-170 601.7 454 65.9
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 8.5e-170 600.9 424 67.5
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.1e-169 600.5 459 66.7
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 1.5e-169 600.1 454 65.4
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 2.5e-169 599.4 379 73.9
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.5e-169 599.4 459 66.4
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 7.2e-169 597.8 456 65.4
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 7.2e-169 597.8 456 66.7
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.6e-168 596.7 464 65.9
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.6e-168 596.7 468 64.5
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 2.7e-168 595.9 461 66.2
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.7e-168 595.9 380 72.9
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 3.6e-168 595.5 460 65.0
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.4e-167 593.6 378 73.0
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.8e-167 593.2 474 62.9
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 3.0e-167 592.4 380 73.4
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 1.2e-166 590.5 379 72.3
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 3.4e-166 589.0 466 64.8
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.3e-165 587.0 467 65.5
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 1.4e-164 583.6 448 65.6
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.8e-164 583.2 386 70.5
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.8e-164 583.2 453 64.0
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 1.6e-163 580.1 454 63.0
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 4.5e-163 578.6 396 68.9
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 7.7e-163 577.8 460 63.9
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.7e-162 576.6 369 73.2
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 5.0e-162 575.1 433 65.1
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 2.5e-161 572.8 466 62.7
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.1e-160 569.7 465 60.6
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 3.6e-160 568.9 430 65.3
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 3.6e-160 568.9 465 60.9
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 5.2e-159 565.1 392 68.1
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 5.2e-159 565.1 394 68.0
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 8.9e-159 564.3 381 69.8
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 8.9e-159 564.3 393 67.9
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 8.9e-159 564.3 381 69.8
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 5.7e-158 561.6 381 69.6
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 9.8e-158 560.8 398 66.6
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 6.4e-157 558.1 461 61.0
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.1e-156 557.4 381 68.8
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 2.4e-156 556.2 405 66.2
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 2.7e-155 552.7 334 77.5
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 3.5e-155 552.4 506 57.3
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 5.9e-155 551.6 481 61.7
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.9e-153 546.6 425 63.3
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.1e-152 543.1 418 65.1
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 4.7e-152 542.0 335 75.5
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.2e-150 537.3 336 75.0
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 3.4e-150 535.8 502 57.2
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 9.8e-150 534.3 492 57.3
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 1.7e-149 533.5 367 65.9
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.0e-146 524.2 405 65.7
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 5.6e-145 518.5 467 55.5
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 2.9e-141 506.1 421 60.6
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 3.2e-140 502.7 400 63.2
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 9.2e-140 501.1 454 58.4
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.7e-138 496.9 317 72.2
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.9e-138 495.7 425 59.8
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 2.9e-133 479.6 381 62.7
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.9e-132 476.9 454 55.5
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 6.6e-130 468.4 281 77.6
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 2.8e-128 463.0 381 59.8
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.0e-122 444.5 459 53.6
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 8.7e-122 441.4 357 59.4
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 7.3e-121 438.3 458 53.9
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.6e-120 437.2 459 52.9
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 3.5e-115 419.5 217 90.8
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.6e-112 409.5 420 54.5
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 4.0e-111 406.0 458 50.9
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 3.5e-107 392.9 244 82.8
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.3e-106 391.0 365 59.5
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.0e-103 379.4 304 64.8
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.3e-93 347.8 209 77.5
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 6.7e-90 335.5 363 46.6
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 5.7e-89 332.4 370 48.1
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 1.8e-82 310.8 375 43.7
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 4.4e-81 306.2 170 84.1
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.3e-80 304.7 300 53.3
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 6.3e-80 302.4 307 54.7
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.1e-76 291.6 175 78.3
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 1.7e-72 277.7 279 48.0
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.2e-70 271.6 253 57.3
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.5e-68 264.6 251 56.2
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 9.4e-68 261.9 246 55.3
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.8e-66 257.7 250 53.2
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 8.3e-56 222.2 292 44.2
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 3.8e-53 213.4 173 59.5
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.1e-52 211.8 243 53.1
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 2.1e-51 207.6 131 80.9
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 1.7e-48 198.0 241 48.5
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 1.7e-40 171.4 95 80.0
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 7.3e-36 156.0 88 78.4
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.0e-29 135.6 143 51.7
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 3.3e-28 130.6 75 77.3
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 8.1e-27 125.9 225 39.1
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 3.1e-26 124.0 364 30.8
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 9.2e-23 112.5 67 80.6
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 3.5e-22 110.5 72 76.4
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.9e-20 104.8 130 46.9
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.3e-16 92.0 55 74.5
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 1.3e-13 82.0 373 24.7
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 8.7e-13 79.3 63 60.3
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 1.5e-09 68.6 38 73.7
CAN.G1236.5 Capsicum annuum HOM05D001621 ORTHO05D013110 3.4e-09 67.4 39 84.6
CAN.G140.11 Capsicum annuum HOM05D001621 ORTHO05D013110 3.4e-09 67.4 39 84.6
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 3.4e-09 67.4 81 39.5
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 6.4e-08 63.2 39 66.7
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 2.4e-07 61.2 49 63.3
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 3.2e-07 60.8 81 40.7


User provided reference genes

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