Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 1.5e-83 312.8 158 100.0
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 1.0e-66 256.9 137 96.4
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.4e-52 209.1 137 80.3
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 2.7e-51 205.7 137 78.8
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 3.8e-50 201.8 157 70.7
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 1.6e-40 169.9 143 63.6
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 4.1e-36 155.2 161 53.4
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.2e-35 153.7 139 59.7
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 2.7e-35 152.5 137 59.9
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 3.5e-35 152.1 139 60.4
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 7.7e-35 151.0 134 61.2
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.0e-34 150.6 137 56.9
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 5.0e-34 148.3 142 54.2
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 7.3e-33 144.4 152 54.6
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 9.5e-33 144.1 121 61.2
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.2e-32 143.7 135 55.6
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 1.6e-32 143.3 137 56.9
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 2.8e-32 142.5 132 56.8
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 2.8e-32 142.5 133 55.6
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 1.8e-31 139.8 126 59.5
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 2.3e-31 139.4 142 54.2
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 3.0e-31 139.0 143 54.5
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 5.2e-31 138.3 133 54.9
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 2.0e-30 136.3 139 55.4
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 4.4e-30 135.2 142 54.9
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 5.7e-30 134.8 143 51.0
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 9.8e-30 134.0 137 53.3
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 9.8e-30 134.0 137 51.1
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 2.2e-29 132.9 143 55.2
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 4.9e-29 131.7 144 54.2
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.4e-28 130.2 143 50.3
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 4.1e-28 128.6 137 51.1
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 7.0e-28 127.9 143 48.3
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 1.2e-27 127.1 133 50.4
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 1.2e-27 127.1 134 50.7
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 1.6e-27 126.7 139 51.1
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 2.0e-27 126.3 137 46.7
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 2.7e-27 125.9 128 54.7
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.5e-27 125.6 132 52.3
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 3.5e-27 125.6 133 51.9
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 3.5e-27 125.6 136 50.0
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 4.6e-27 125.2 133 50.4
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 5.9e-27 124.8 143 46.9
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 7.8e-27 124.4 132 53.0
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.0e-26 124.0 132 52.3
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 1.3e-26 123.6 137 47.4
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 1.7e-26 123.2 137 47.4
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.7e-26 123.2 133 51.1
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 2.3e-26 122.9 131 50.4
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 2.3e-26 122.9 118 55.9
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 2.3e-26 122.9 143 44.8
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 3.9e-26 122.1 128 53.9
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 5.0e-26 121.7 132 50.8
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 5.0e-26 121.7 133 50.4
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.9e-25 119.8 132 51.5
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 9.5e-25 117.5 132 47.0
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 9.5e-25 117.5 148 45.9
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.6e-24 116.7 139 46.8
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 2.8e-24 115.9 144 45.8
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 2.8e-24 115.9 132 47.0
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 3.6e-24 115.5 135 47.4
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.6e-24 115.5 135 48.1
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 4.7e-24 115.2 135 47.4
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.0e-23 114.0 141 46.8
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.4e-23 113.6 134 47.0
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 1.4e-23 113.6 124 47.6
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 1.8e-23 113.2 138 44.9
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.3e-23 112.8 143 44.1
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 2.3e-23 112.8 135 47.4
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 4.0e-23 112.1 135 45.2
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 8.9e-23 110.9 137 49.6
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 1.5e-22 110.2 135 46.7
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 3.4e-22 109.0 135 46.7
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 5.8e-22 108.2 136 44.1
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 7.5e-22 107.8 127 48.0
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 7.5e-22 107.8 142 45.1
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 9.8e-22 107.5 135 46.7
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 9.8e-22 107.5 132 47.0
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.7e-21 106.7 215 35.3
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 2.9e-21 105.9 121 47.1
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 3.7e-21 105.5 129 46.5
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 4.9e-21 105.1 137 45.3
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.1e-20 104.0 96 55.2
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 1.9e-20 103.2 92 59.8
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 1.2e-19 100.5 139 40.3
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 2.7e-19 99.4 96 50.0
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 3.0e-18 95.9 168 36.3
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 3.0e-18 95.9 241 29.9
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 2.5e-17 92.8 89 57.3
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 3.3e-17 92.4 149 37.6
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.6e-16 90.1 147 38.1
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 3.6e-16 89.0 190 33.7
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 4.7e-16 88.6 88 51.1
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.4e-12 77.0 84 48.8
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 3.2e-12 75.9 119 40.3
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 7.1e-12 74.7 74 51.4
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 7.1e-12 74.7 74 51.4
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 1.2e-11 73.9 134 36.6
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 2.1e-11 73.2 37 94.6
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 5.2e-07 58.5 113 32.7


User provided reference genes

Program Settings