Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 5.1e-87 324.3 158 100.0
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 7.4e-86 320.5 158 98.1
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 4.1e-84 314.7 158 95.6
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 9.0e-76 287.0 158 86.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 3.6e-72 275.0 158 83.5
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 3.2e-65 251.9 160 78.8
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.3e-53 213.4 160 68.8
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.0e-52 207.6 178 61.8
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.0e-51 206.1 158 63.9
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 3.5e-51 205.3 159 64.8
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.7e-50 203.0 158 63.3
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 5.0e-50 201.4 162 64.2
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.5e-49 199.1 153 60.8
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 3.2e-49 198.7 144 70.1
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 7.2e-49 197.6 158 58.9
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.1e-48 196.1 158 61.4
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 6.1e-48 194.5 135 69.6
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 4.0e-47 191.8 158 60.1
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 6.8e-47 191.0 158 60.1
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 8.8e-47 190.7 158 61.4
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.6e-46 189.1 160 61.2
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 5.7e-46 188.0 156 59.6
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 7.5e-46 187.6 155 60.0
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 7.5e-46 187.6 150 61.3
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 9.8e-46 187.2 134 65.7
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 9.8e-46 187.2 158 58.2
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.7e-45 186.4 160 59.4
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.7e-45 186.4 160 59.4
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.7e-45 186.4 158 57.6
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 2.2e-45 186.0 118 71.2
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 2.8e-45 185.7 155 58.7
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 4.8e-45 184.9 158 59.5
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.8e-45 184.9 158 59.5
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 6.3e-45 184.5 148 58.1
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 8.3e-45 184.1 159 58.5
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.4e-44 183.3 155 56.8
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.8e-44 183.0 159 58.5
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.8e-44 183.0 158 58.2
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.8e-44 183.0 160 60.6
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 2.4e-44 182.6 158 58.9
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 7.0e-44 181.0 160 56.9
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 9.1e-44 180.6 158 57.6
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.0e-43 179.5 158 58.9
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.5e-43 178.7 152 59.9
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 5.9e-43 177.9 136 63.2
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 7.7e-43 177.6 134 61.9
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 7.7e-43 177.6 160 56.9
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.0e-42 177.2 134 63.4
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 2.2e-42 176.0 161 56.5
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.9e-42 175.6 136 62.5
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.9e-42 175.6 140 60.7
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 2.9e-42 175.6 162 55.6
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 5.0e-42 174.9 151 57.6
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 6.5e-42 174.5 161 59.6
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 6.5e-42 174.5 135 63.0
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 6.5e-42 174.5 164 53.7
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 6.5e-42 174.5 164 53.7
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 6.5e-42 174.5 164 53.7
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 6.5e-42 174.5 152 57.9
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 6.5e-42 174.5 158 57.6
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 8.5e-42 174.1 158 56.3
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.1e-41 173.7 148 58.8
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.5e-41 173.3 157 59.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.5e-41 172.6 161 59.0
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.5e-41 172.6 158 55.7
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.2e-41 172.2 163 55.8
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 3.2e-41 172.2 158 57.6
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 5.5e-41 171.4 158 51.9
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 7.2e-41 171.0 135 62.2
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 7.2e-41 171.0 155 54.2
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.2e-40 170.2 163 55.2
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.6e-40 169.9 157 55.4
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.6e-40 169.9 161 57.8
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.1e-40 169.5 147 61.9
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.7e-40 169.1 160 54.4
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 4.7e-40 168.3 114 71.1
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 4.7e-40 168.3 133 60.2
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 6.1e-40 167.9 158 50.6
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 6.1e-40 167.9 163 56.4
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 8.0e-40 167.5 143 58.0
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.4e-39 166.8 146 56.2
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.8e-39 166.4 151 58.9
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 2.3e-39 166.0 142 58.5
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 3.0e-39 165.6 158 57.6
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 6.8e-39 164.5 139 57.6
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 6.8e-39 164.5 158 51.9
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.2e-38 163.7 161 54.7
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-38 162.9 160 53.1
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 7.5e-38 161.0 83 83.1
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 9.8e-38 160.6 81 87.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 9.8e-38 160.6 158 52.5
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.7e-37 159.8 104 75.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.7e-37 159.8 138 57.2
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.7e-37 159.8 94 74.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.7e-37 159.8 92 76.1
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.8e-37 159.1 158 51.9
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 3.7e-37 158.7 104 68.3
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 6.3e-37 157.9 103 66.0
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 8.3e-37 157.5 102 68.6
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.3e-37 157.5 166 50.0
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.1e-36 157.1 160 52.5
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.1e-36 157.1 154 53.2
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.1e-36 155.6 154 50.0
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 3.1e-36 155.6 130 56.9
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 3.1e-36 155.6 90 73.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 4.1e-36 155.2 159 49.7
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 9.2e-36 154.1 161 50.9
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-35 152.9 141 54.6
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 2.7e-35 152.5 96 66.7
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 7.7e-35 151.0 132 53.8
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.9e-33 146.4 157 47.1
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.3e-33 145.6 162 48.1
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 7.3e-33 144.4 170 50.0
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.8e-32 142.5 134 56.7
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 3.6e-32 142.1 78 76.9
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.5e-30 136.7 105 60.0
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 7.5e-30 134.4 135 50.4
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.4e-28 130.2 81 69.1
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 7.8e-27 124.4 109 54.1
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.3e-25 119.0 91 60.4
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 8.0e-24 114.4 108 53.7
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.4e-23 113.6 112 50.9
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.8e-23 113.2 134 47.0
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 3.1e-23 112.5 82 63.4
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 4.0e-23 112.1 85 61.2
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 7.5e-22 107.8 54 77.8
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.3e-21 107.1 99 53.5
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.9e-20 103.2 159 40.9
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 2.0e-19 99.8 90 48.9
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.7e-18 96.7 159 39.6
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 3.9e-18 95.5 82 58.5
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 8.6e-18 94.4 85 52.9
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.2e-16 90.5 101 46.5
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.1e-15 87.4 65 63.1
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.0e-14 83.2 43 81.4
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 6.4e-13 78.2 109 36.7
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.7e-11 72.8 82 47.6
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 3.0e-10 69.3 115 35.7
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.9e-09 66.6 43 60.5
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 4.3e-09 65.5 42 61.9
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 7.3e-09 64.7 41 63.4
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 2.8e-08 62.8 49 55.1


User provided reference genes

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