Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 8.8e-165 583.6 296 100.0
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 2.8e-163 578.6 296 98.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 2.2e-160 568.9 296 97.6
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.0e-148 529.3 298 90.6
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.5e-143 511.1 294 88.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.2e-141 504.6 283 90.8
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 4.8e-139 498.0 297 84.5
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.7e-123 446.4 295 75.3
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 5.4e-122 441.4 298 74.8
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 5.0e-120 434.9 298 75.2
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 5.6e-119 431.4 295 74.6
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 5.6e-119 431.4 295 74.2
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 6.2e-118 427.9 298 72.8
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.0e-117 427.2 295 72.9
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.4e-117 426.8 295 73.2
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.4e-117 426.8 295 73.2
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 2.3e-117 426.0 299 73.9
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 6.8e-117 424.5 301 71.4
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 6.8e-117 424.5 296 73.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 6.8e-117 424.5 295 72.9
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.5e-116 423.3 285 74.7
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.3e-115 420.2 285 74.7
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 1.3e-115 420.2 295 71.5
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 2.9e-115 419.1 297 72.1
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 3.7e-115 418.7 296 72.6
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.9e-114 416.4 295 71.2
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 5.4e-114 414.8 295 71.2
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 7.0e-114 414.5 295 70.8
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 9.2e-114 414.1 295 70.8
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 1.6e-113 413.3 279 73.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.0e-113 412.9 295 71.9
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.5e-113 412.1 295 71.2
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 4.6e-113 411.8 280 73.9
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 7.8e-113 411.0 295 69.8
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 1.7e-112 409.8 298 70.8
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 3.0e-112 409.1 295 70.8
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 8.6e-112 407.5 295 69.5
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.1e-111 407.1 297 72.1
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.1e-111 407.1 295 69.5
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 2.5e-111 406.0 295 69.2
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 5.6e-111 404.8 295 70.5
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 5.6e-111 404.8 278 73.4
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.2e-110 403.7 279 71.7
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 8.1e-110 401.0 299 67.9
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 1.1e-109 400.6 299 68.6
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.4e-109 400.2 295 70.5
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 4.0e-109 398.7 298 69.8
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 4.0e-109 398.7 296 69.6
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 6.8e-109 397.9 297 69.7
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 6.8e-109 397.9 319 65.5
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.5e-108 396.7 295 68.1
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.0e-108 396.4 298 69.1
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.6e-108 396.0 301 68.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 3.4e-108 395.6 253 77.9
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.7e-107 393.3 285 67.4
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.2e-107 392.9 246 77.6
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 2.9e-107 392.5 295 67.8
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.9e-107 392.5 300 67.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.7e-107 392.1 310 67.7
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 3.7e-107 392.1 300 66.3
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.7e-107 392.1 296 67.6
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 4.9e-107 391.7 256 74.6
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 6.4e-107 391.3 285 67.0
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.4e-106 390.2 250 76.4
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 1.4e-106 390.2 295 67.8
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.9e-106 389.8 253 77.5
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 2.4e-106 389.4 245 78.0
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.2e-106 389.0 280 69.6
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 3.2e-106 389.0 314 65.6
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 4.1e-106 388.7 283 69.3
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 4.6e-105 385.2 299 67.9
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.3e-104 383.6 228 79.4
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.7e-104 383.3 305 65.6
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 2.3e-104 382.9 298 68.1
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 8.6e-104 380.9 300 69.0
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.1e-103 380.6 297 67.0
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.5e-103 380.2 255 72.5
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.9e-103 379.8 268 72.4
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 3.3e-103 379.0 334 61.7
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 4.3e-103 378.6 295 65.1
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 4.3e-103 378.6 295 65.1
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 4.3e-103 378.6 295 65.1
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 4.3e-103 378.6 295 65.1
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 5.6e-103 378.3 255 73.3
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 9.5e-103 377.5 255 72.2
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.6e-102 376.7 255 72.5
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.6e-102 376.7 295 64.7
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 4.7e-102 375.2 255 71.8
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 4.7e-102 375.2 295 65.1
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 1.4e-101 373.6 256 71.9
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.8e-101 373.2 296 63.5
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 2.3e-101 372.9 295 64.4
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 2.3e-101 372.9 299 65.6
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 3.1e-101 372.5 297 66.7
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 5.2e-101 371.7 290 66.6
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.5e-100 370.2 366 57.1
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 5.8e-100 368.2 275 68.4
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 3.8e-99 365.5 219 81.3
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 8.4e-99 364.4 424 52.4
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.7e-97 359.4 246 73.6
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.5e-97 359.0 297 66.3
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 3.5e-97 359.0 278 66.2
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.7e-96 356.7 283 65.4
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.3e-96 356.3 283 64.7
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.3e-96 356.3 295 64.1
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.9e-96 355.5 243 72.4
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 5.1e-96 355.1 224 75.4
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.9e-95 353.2 345 56.5
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.9e-91 339.3 274 63.1
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 4.9e-91 338.6 294 60.5
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 1.1e-90 337.4 252 67.1
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.2e-89 334.0 258 67.4
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.6e-89 332.0 301 60.8
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.9e-87 326.6 294 58.8
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.9e-87 326.6 254 65.4
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 4.8e-86 322.0 264 63.6
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.1e-85 320.9 261 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.9e-83 312.0 226 66.4
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 9.3e-82 307.8 260 64.6
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 9.3e-82 307.8 226 67.3
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 2.1e-78 296.6 223 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.6e-78 295.8 213 67.6
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.8e-77 293.5 202 71.8
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 5.5e-74 282.0 263 56.3
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.0e-67 261.2 259 51.7
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 5.5e-66 255.4 288 52.4
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 3.9e-64 249.2 140 83.6
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 5.1e-64 248.8 230 57.8
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.1e-63 247.7 140 85.0
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-62 244.2 132 88.6
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.1e-61 241.1 216 55.1
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-57 227.3 234 48.7
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 4.6e-57 225.7 220 50.9
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 9.4e-50 201.4 300 40.0
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.1e-49 200.3 241 44.0
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.4e-48 197.6 234 44.4
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 8.8e-48 194.9 142 66.9
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 1.1e-47 194.5 156 69.2
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 3.7e-46 189.5 161 61.5
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 5.3e-45 185.7 168 61.3
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 5.0e-43 179.1 110 77.3
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 9.4e-42 174.9 138 67.4
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.4e-37 160.2 97 80.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 7.7e-36 155.2 109 65.1
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.0e-35 152.5 97 78.4
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.8e-30 136.7 107 69.2
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 5.0e-27 125.9 92 68.5
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.9e-26 124.0 81 75.3
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 2.2e-22 110.5 67 77.6
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.1e-21 108.2 155 45.8
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.7e-19 100.9 135 42.2


User provided reference genes

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