Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g076490.3 Solanum lycopersicum HOM05D001128 ORTHO05D000721 1.6e-209 732.6 397 100.0
Sopen06g032900 Solanum pennellii HOM05D001128 ORTHO05D000721 6.4e-195 684.1 397 95.7
PGSC0003DMG400030336 Solanum tuberosum HOM05D001128 ORTHO05D000721 1.1e-186 656.8 402 86.8
CAN.G394.85 Capsicum annuum HOM05D001128 ORTHO05D000721 9.7e-135 484.2 418 68.9
Nitab4.5_0000744g0010 Nicotiana tabacum HOM05D001128 ORTHO05D000721 3.7e-118 429.1 415 63.6
Nitab4.5_0009885g0020 Nicotiana tabacum HOM05D001128 ORTHO05D000721 5.5e-106 388.7 354 66.4
Peaxi162Scf00481g00624 Petunia axillaris HOM05D001128 ORTHO05D000721 1.6e-97 360.5 349 63.3
Cc01_g13540 Coffea canephora HOM05D001128 ORTHO05D000721 3.1e-32 143.7 383 37.1
Dinv17068 Davidia involucrata HOM05D001128 ORTHO05D000721 2.7e-28 130.6 393 33.3
Dinv43012 Davidia involucrata HOM05D001128 ORTHO05D000721 1.4e-27 128.3 393 33.8
Dinv43085 Davidia involucrata HOM05D001128 ORTHO05D000721 1.4e-27 128.3 393 33.8
Rhsim13G0075900 Rhododendron simsii HOM05D001128 ORTHO05D000721 2.3e-27 127.5 349 35.5
CSS0027233 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 4.3e-26 123.2 338 34.6
Lsat_1_v5_gn_8_72501 Lactuca sativa HOM05D001128 ORTHO05D000721 1.8e-24 117.9 351 33.9
vmacro03017 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 1.8e-24 117.9 366 33.6
Actinidia12878 Actinidia chinensis HOM05D001128 ORTHO05D000721 3.4e-23 113.6 355 35.2
CSS0032417 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 1.0e-22 112.1 365 35.6
ECA236G1683 Erigeron canadensis HOM05D001128 ORTHO05D000721 1.0e-22 112.1 348 32.8
MSTRG.17824 Avicennia marina HOM05D001128 ORTHO05D000721 6.5e-22 109.4 365 33.2
HanXRQChr08g0212731 Helianthus annuus HOM05D001128 ORTHO05D000721 9.4e-21 105.5 348 31.9
Dinv34306 Davidia involucrata HOM05D001128 ORTHO05D000721 1.0e-19 102.1 252 39.3
SalBow2G1629 Salvia bowleyana HOM05D001128 ORTHO05D000721 6.7e-19 99.4 331 32.6
SalBow6G5821 Salvia bowleyana HOM05D001128 ORTHO05D000721 2.6e-18 97.4 386 30.3
Manes.01G167300 Manihot esculenta HOM05D001128 ORTHO05D000721 7.4e-18 95.9 331 32.6
Gohir.D05G092700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 2.2e-17 94.4 349 32.1
Gorai.009G095300 Gossypium raimondii HOM05D001128 ORTHO05D000721 4.8e-17 93.2 349 32.4
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 3.1e-16 90.5 377 31.3
Manes.02G125700 Manihot esculenta HOM05D001128 ORTHO05D000721 1.5e-15 88.2 355 32.7
Atru.chr3.4033 Acer truncatum HOM05D001128 ORTHO05D000721 2.0e-15 87.8 369 30.4
Duzib168G0052 Durio zibethinus HOM05D001128 ORTHO05D000721 1.3e-14 85.1 344 31.4
Haze_24208 Corylus avellana HOM05D001128 ORTHO05D000721 3.2e-13 80.5 339 30.4
MD03G1082700 Malus domestica HOM05D001128 ORTHO05D000721 4.2e-13 80.1 392 27.8
TWI75G1051 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 4.2e-13 80.1 334 29.6
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 1.2e-12 78.6 390 27.7
Thecc.09G311600 Theobroma cacao HOM05D001128 ORTHO05D000721 1.6e-12 78.2 353 28.9
Potri.009G038600 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.1e-12 77.8 354 29.9
Glyma.13G339500 Glycine max HOM05D001128 ORTHO05D000721 2.7e-12 77.4 306 30.4
Migut.N00909 Erythranthe guttata HOM05D001128 ORTHO05D000721 3.6e-12 77.0 337 30.0
Lsat_1_v5_gn_5_168381 Lactuca sativa HOM05D001128 ORTHO05D000721 3.6e-12 77.0 368 26.6
TWI79G1361 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 3.6e-12 77.0 333 27.0
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 2.3e-11 74.3 381 28.1
MSTRG.12657 Avicennia marina HOM05D001128 ORTHO05D000721 3.0e-11 73.9 359 29.8
Gohir.A05G091900 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.0e-11 73.9 342 28.4
Gohir.A03G046700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.0e-11 73.6 374 29.1
Cfa011590 Carpinus fangiana HOM05D001128 ORTHO05D000721 6.7e-11 72.8 336 28.3
PSO384G2375 Papaver somniferum HOM05D001128 ORTHO05D000721 8.8e-11 72.4 133 37.6
Gorai.003G127200 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.1e-10 72.0 359 29.0
Gohir.D03G120500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.5e-10 71.6 361 29.1
Duzib170G1159 Durio zibethinus HOM05D001128 ORTHO05D000721 2.6e-10 70.9 357 30.0
Sabra09G0027500 Salix brachista HOM05D001128 ORTHO05D000721 3.3e-10 70.5 384 28.1
QL01p028290 Quercus lobata HOM05D001128 ORTHO05D000721 4.4e-10 70.1 378 27.0
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 4.4e-10 70.1 380 28.4
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 5.7e-10 69.7 385 28.6
arahy.Tifrunner.gnm1.ann1.BMML80 Arachis hypogaea HOM05D001128 ORTHO05D000721 7.5e-10 69.3 127 40.2
Ciclev10029021m.g Citrus clementina HOM05D001128 ORTHO05D000721 2.2e-09 67.8 350 30.0
Prupe.6G067000 Prunus persica HOM05D001128 ORTHO05D000721 2.2e-09 67.8 336 26.5
FAN21G1564 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.8e-09 67.4 345 26.7
Lalb_Chr19g0138041 Lupinus albus HOM05D001128 ORTHO05D000721 2.8e-09 67.4 118 39.8
Lalb_Chr14g0372071 Lupinus albus HOM05D001128 ORTHO05D000721 3.7e-09 67.0 340 28.5
Lalb_Chr24g0397131 Lupinus albus HOM05D001128 ORTHO05D000721 3.7e-09 67.0 158 34.2
arahy.Tifrunner.gnm1.ann1.E0Q1QR Arachis hypogaea HOM05D001128 ORTHO05D000721 8.2e-09 65.9 116 38.8
CDE02G1727 Ceratophyllum demersum HOM05D001128 ORTHO05D000721 1.1e-08 65.5 133 36.8
Ca_01300_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 1.1e-08 65.5 341 28.2
HanXRQChr05g0149921 Helianthus annuus HOM05D001128 ORTHO05D000721 1.1e-08 65.5 126 36.5
GSVIVG01034054001 Vitis vinifera HOM05D001128 ORTHO05D000721 1.4e-08 65.1 382 26.7
CiPaw.13G086900 Carya illinoinensis HOM05D001128 ORTHO05D000721 1.8e-08 64.7 372 27.2
Potri.008G062200 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.8e-08 64.7 139 38.8
Medtr2g097800 Medicago truncatula HOM05D001128 ORTHO05D000721 2.4e-08 64.3 337 26.4
Phvul.L008643 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.1e-08 63.9 135 40.0
TPR.G6832 Trifolium pratense HOM05D001128 ORTHO05D000721 3.1e-08 63.9 317 29.0
GSVIVG01024844001 Vitis vinifera HOM05D001128 ORTHO05D000721 3.1e-08 63.9 341 28.4
Cpa.g.sc81.51 Carica papaya HOM05D001128 ORTHO05D000721 4.1e-08 63.5 377 28.6
Actinidia28180 Actinidia chinensis HOM05D001128 ORTHO05D000721 5.3e-08 63.2 76 53.9
Oeu007672.1 Olea europaea HOM05D001128 ORTHO05D000721 5.3e-08 63.2 347 28.5
Sed0009465 Sechium edule HOM05D021754 ORTHO05D000721 5.3e-08 63.2 334 26.6
CSS0047983 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 7.0e-08 62.8 92 41.3
Dinv34448 Davidia involucrata HOM05D001128 ORTHO05D000721 1.2e-07 62.0 363 26.2
MD11G1090800 Malus domestica HOM05D001128 ORTHO05D000721 1.2e-07 62.0 384 27.9
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 1.2e-07 62.0 390 26.7
Manes.10G020800 Manihot esculenta HOM05D001128 ORTHO05D000721 2.0e-07 61.2 128 35.2
Psat5g286040 Pisum sativum HOM05D001128 ORTHO05D000721 2.0e-07 61.2 307 26.1
Nitab4.5_0000652g0060 Nicotiana tabacum HOM05D001128 ORTHO05D000721 2.6e-07 60.8 350 26.9
Cpa.g.sc19.247 Carica papaya HOM05D001128 ORTHO05D000721 3.5e-07 60.5 375 26.4
Gorai.006G178800 Gossypium raimondii HOM05D001128 ORTHO05D000721 3.5e-07 60.5 375 27.5
Hma1.2p1_0671F.1_g200660 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 3.5e-07 60.5 422 26.5
Peaxi162Scf00009g03319 Petunia axillaris HOM05D001128 ORTHO05D000721 3.5e-07 60.5 133 37.6
AT5G59050 Arabidopsis thaliana HOM05D009319 ORTHO05D000721 4.5e-07 60.1 339 28.0
MELO3C020595.2 Cucumis melo HOM05D021754 ORTHO05D000721 4.5e-07 60.1 356 27.2
SGA_v2.0_scaffold199G41168 Striga asiatica HOM05D001128 ORTHO05D000721 4.5e-07 60.1 327 31.5
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 4.5e-07 60.1 355 27.6
GSVIVG01016431001 Vitis vinifera HOM05D001128 ORTHO05D000721 4.5e-07 60.1 223 29.1
Ciclev10011799m.g Citrus clementina HOM05D001128 ORTHO05D000721 5.9e-07 59.7 164 32.9
FvH4_3g37230 Fragaria vesca HOM05D001128 ORTHO05D000721 5.9e-07 59.7 384 27.3
TAR369G0849 Trochodendron aralioides HOM05D001128 ORTHO05D000721 5.9e-07 59.7 179 31.3
DCAR_005928 Daucus carota HOM05D001128 ORTHO05D000721 7.7e-07 59.3 123 37.4
PGR031G3883 Punica granatum HOM05D001128 ORTHO05D000721 7.7e-07 59.3 140 33.6
vmacro07011 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 7.7e-07 59.3 381 28.9
Oeu009915.1 Olea europaea HOM05D001128 ORTHO05D000721 1.0e-06 58.9 130 33.1
Cpa.g.sc56.66 Carica papaya HOM05D001128 ORTHO05D000721 1.3e-06 58.5 387 26.6
FAN25G3787 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.3e-06 58.5 351 25.6
Medtr4g064947 Medicago truncatula HOM05D001128 ORTHO05D000721 1.3e-06 58.5 131 34.4
Sabra08G0045800 Salix brachista HOM05D001128 ORTHO05D000721 1.3e-06 58.5 380 28.7
Carub.0008s1989 Capsella rubella HOM05D009319 ORTHO05D000721 1.7e-06 58.2 329 24.6
Cfa001394 Carpinus fangiana HOM05D001128 ORTHO05D000721 1.7e-06 58.2 393 25.2
Dinv16282 Davidia involucrata HOM05D001128 ORTHO05D000721 1.7e-06 58.2 401 25.7
Migut.J00260 Erythranthe guttata HOM05D001128 ORTHO05D000721 1.7e-06 58.2 126 36.5
PGR044G0160 Punica granatum HOM05D001128 ORTHO05D000721 1.7e-06 58.2 137 35.0
GSVIVG01026841001 Vitis vinifera HOM05D001128 ORTHO05D000721 1.7e-06 58.2 122 38.5
arahy.Tifrunner.gnm1.ann1.N2YSCM Arachis hypogaea HOM05D001128 ORTHO05D000721 2.2e-06 57.8 129 38.0
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 2.2e-06 57.8 377 26.8
ECA247G0052 Erigeron canadensis HOM05D001128 ORTHO05D000721 2.2e-06 57.8 323 27.9
GSVIVG01038461001 Vitis vinifera HOM05D001128 ORTHO05D000721 2.2e-06 57.8 122 38.5
MSTRG.5621 Avicennia marina HOM05D001128 ORTHO05D000721 2.9e-06 57.4 123 33.3
FAN16G1449 Fragaria x ananassa HOM05D001128 ORTHO05D000721 2.9e-06 57.4 408 25.5
Hma1.2p1_0039F.1_g024950 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 2.9e-06 57.4 378 26.2
RcHm_v2.0_Chr5g0066981 Rosa chinensis HOM05D001128 ORTHO05D000721 2.9e-06 57.4 385 26.8
GSVIVG01007626001 Vitis vinifera HOM05D001128 ORTHO05D000721 2.9e-06 57.4 122 38.5
BcaC03g14030 Brassica carinata HOM05D009319 ORTHO05D000721 3.8e-06 57.0 321 25.2
BolC2t07368H Brassica oleracea HOM05D009319 ORTHO05D000721 3.8e-06 57.0 321 25.2
Cfa017294 Carpinus fangiana HOM05D001128 ORTHO05D000721 3.8e-06 57.0 127 35.4
Haze_17155 Corylus avellana HOM05D001128 ORTHO05D000721 3.8e-06 57.0 391 24.6
PSO339G4622 Papaver somniferum HOM05D001128 ORTHO05D000721 3.8e-06 57.0 397 27.2
Thecc.05G027900 Theobroma cacao HOM05D001128 ORTHO05D000721 3.8e-06 57.0 388 26.0
Sp6g20920 Schrenkiella parvula HOM05D009319 ORTHO05D000721 5.0e-06 56.6 345 25.2
VMungo1080G0292 Vigna mungo HOM05D001128 ORTHO05D000721 5.0e-06 56.6 315 25.4
Actinidia13814 Actinidia chinensis HOM05D001128 ORTHO05D000721 6.5e-06 56.2 394 26.1
BcaC04g19808 Brassica carinata HOM05D009319 ORTHO05D000721 6.5e-06 56.2 345 25.2
C02p12700 Brassica napus HOM05D009319 ORTHO05D000721 6.5e-06 56.2 321 25.2
Glyma.11G134800 Glycine max HOM05D001128 ORTHO05D000721 6.5e-06 56.2 110 39.1
Glyma.15G034900 Glycine max HOM05D001128 ORTHO05D000721 6.5e-06 56.2 175 33.7
Hma1.2p1_1521F.1_g288670 Hydrangea macrophylla HOM05D001128 ORTHO05D000721 6.5e-06 56.2 143 35.7
Sabra10G0150300 Salix brachista HOM05D001128 ORTHO05D000721 6.5e-06 56.2 385 28.3
A03p11830 Brassica napus HOM05D009319 ORTHO05D000721 8.5e-06 55.8 346 27.5
CARHR285570 Cardamine hirsuta HOM05D009319 ORTHO05D000721 8.5e-06 55.8 337 25.8
CiPaw.09G202700 Carya illinoinensis HOM05D001128 ORTHO05D000721 8.5e-06 55.8 250 30.8
Ca_20607_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 8.5e-06 55.8 117 38.5
Ca_29561_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 8.5e-06 55.8 117 38.5
Gohir.D09G157200 Gossypium hirsutum HOM05D001128 ORTHO05D000721 8.5e-06 55.8 375 27.2
Nn1g00331 Nelumbo nucifera HOM05D001128 ORTHO05D000721 8.5e-06 55.8 122 35.2


User provided reference genes

Program Settings