Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 1.3e-41 172.6 83 100.0
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 3.4e-34 147.9 72 100.0
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 3.4e-34 147.9 72 100.0
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 8.5e-33 143.3 78 85.9
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 1.4e-32 142.5 72 95.8
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 1.4e-32 142.5 72 95.8
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 1.4e-32 142.5 72 95.8
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 1.4e-32 142.5 72 95.8
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 1.9e-32 142.1 72 94.4
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 1.9e-32 142.1 72 94.4
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 1.9e-32 142.1 72 94.4
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 1.9e-32 142.1 72 94.4
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 3.2e-32 141.4 73 91.8
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 5.5e-32 140.6 75 89.3
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 7.2e-32 140.2 72 93.1
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 9.4e-32 139.8 81 80.2
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 1.2e-31 139.4 74 90.5
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 1.6e-31 139.0 73 89.0
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 2.7e-31 138.3 72 91.7
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 2.7e-31 138.3 73 89.0
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 4.7e-31 137.5 72 90.3
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 4.7e-31 137.5 73 89.0
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 4.7e-31 137.5 72 91.7
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 4.7e-31 137.5 73 89.0
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 6.1e-31 137.1 72 91.7
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 7.9e-31 136.7 73 86.3
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 7.9e-31 136.7 72 90.3
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 7.9e-31 136.7 72 90.3
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 1.0e-30 136.3 70 92.9
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 1.0e-30 136.3 72 88.9
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.4e-30 136.0 72 87.5
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.4e-30 136.0 72 87.5
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 1.8e-30 135.6 72 88.9
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 2.3e-30 135.2 73 87.7
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 3.9e-30 134.4 82 76.8
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 3.9e-30 134.4 72 87.5
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 5.1e-30 134.0 72 88.9
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 5.1e-30 134.0 72 88.9
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 6.7e-30 133.7 73 86.3
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 6.7e-30 133.7 76 84.2
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 1.5e-29 132.5 72 86.1
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 2.0e-29 132.1 73 84.9
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 2.0e-29 132.1 73 84.9
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 2.0e-29 132.1 76 82.9
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 2.0e-29 132.1 72 86.1
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 2.0e-29 132.1 72 87.5
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 2.0e-29 132.1 73 83.6
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 2.6e-29 131.7 74 82.4
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 2.6e-29 131.7 72 86.1
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 2.6e-29 131.7 72 86.1
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 2.6e-29 131.7 73 84.9
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 2.6e-29 131.7 73 84.9
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.6e-29 131.7 73 84.9
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 2.6e-29 131.7 76 82.9
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 2.6e-29 131.7 72 84.7
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 3.3e-29 131.3 72 84.7
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 3.3e-29 131.3 72 84.7
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 3.3e-29 131.3 72 83.3
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 3.3e-29 131.3 76 81.6
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 3.3e-29 131.3 72 84.7
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 4.4e-29 131.0 72 86.1
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 4.4e-29 131.0 72 83.3
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 4.4e-29 131.0 72 84.7
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 7.4e-29 130.2 72 86.1
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 7.4e-29 130.2 72 83.3
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 9.7e-29 129.8 72 83.3
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 1.3e-28 129.4 73 83.6
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 1.3e-28 129.4 73 83.6
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.3e-28 129.4 73 84.9
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 2.2e-28 128.6 77 79.2
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 2.2e-28 128.6 72 84.7
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 2.8e-28 128.3 72 84.7
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 3.7e-28 127.9 72 84.7
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 6.3e-28 127.1 72 83.3
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 6.3e-28 127.1 77 77.9
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 6.3e-28 127.1 76 80.3
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 6.3e-28 127.1 76 80.3
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 6.3e-28 127.1 76 80.3
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 6.3e-28 127.1 76 80.3
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 1.1e-27 126.3 73 82.2
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.1e-27 126.3 73 82.2
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 1.4e-27 125.9 72 81.9
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.4e-27 125.2 76 78.9
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 4.1e-27 124.4 73 80.8
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 7.0e-27 123.6 72 80.6
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 2.0e-26 122.1 71 80.3
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 2.0e-26 122.1 71 80.3
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 1.3e-25 119.4 72 76.4
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 2.9e-25 118.2 69 79.7
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 2.9e-25 118.2 69 79.7
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 2.9e-25 118.2 69 78.3
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 2.9e-25 118.2 69 79.7
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 2.9e-25 118.2 69 79.7
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 2.9e-25 118.2 69 79.7
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 2.9e-25 118.2 69 78.3
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 3.8e-25 117.9 69 78.3
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 3.8e-25 117.9 69 78.3
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 3.8e-25 117.9 69 78.3
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 3.8e-25 117.9 69 78.3
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 3.8e-25 117.9 70 75.7
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 3.8e-25 117.9 69 78.3
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 3.8e-25 117.9 69 78.3
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 5.0e-25 117.5 72 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 6.5e-25 117.1 72 75.0
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 8.5e-25 116.7 69 76.8
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 1.5e-24 115.9 81 66.7
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 1.5e-24 115.9 72 75.0
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 1.5e-24 115.9 77 71.4
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 1.9e-24 115.5 72 76.4
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 2.5e-24 115.2 72 77.8
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.5e-24 115.2 73 72.6
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 2.5e-24 115.2 72 72.2
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 7.2e-24 113.6 69 75.4
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 2.1e-23 112.1 66 77.3
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 3.6e-23 111.3 115 55.7
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.0e-22 109.8 72 68.1
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 1.1e-21 106.3 61 78.7
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.5e-21 105.9 69 69.6
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 9.7e-21 103.2 75 65.3
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 2.2e-20 102.1 57 80.7
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 2.8e-20 101.7 57 87.7
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 1.1e-19 99.8 62 79.0
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 9.1e-19 96.7 48 91.7
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 1.3e-17 92.8 60 71.7
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 1.7e-17 92.4 124 43.5
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 2.2e-17 92.0 77 54.5
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.5e-16 89.4 73 63.0
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 8.0e-15 83.6 68 52.9
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 3.7e-12 74.7 42 81.0
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 3.1e-11 71.6 34 91.2
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 2.0e-10 68.9 37 89.2
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 2.0e-10 68.9 69 49.3
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 3.8e-09 64.7 35 74.3


User provided reference genes

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