Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 4.9e-219 764.2 402 100.0
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 5.1e-208 727.6 404 96.5
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 3.0e-160 568.9 329 92.1
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 5.4e-149 531.6 413 73.8
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.7e-139 500.0 422 69.4
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 2.7e-116 422.9 389 65.8
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.4e-109 400.6 413 60.8
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.6e-68 264.2 417 45.6
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 2.2e-62 243.8 326 51.5
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 5.2e-59 232.6 450 41.6
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 9.7e-58 228.4 330 48.8
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.3e-57 228.0 319 48.9
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 2.4e-56 223.8 329 48.3
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 3.1e-56 223.4 340 48.8
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 2.2e-54 217.2 342 44.4
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 5.0e-54 216.1 332 46.4
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 4.2e-53 213.0 477 37.3
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 5.5e-53 212.6 344 45.9
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 2.1e-52 210.7 321 45.5
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 6.1e-52 209.1 455 36.5
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.0e-51 208.4 343 45.5
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 7.5e-50 202.2 320 45.9
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.3e-49 201.4 345 44.3
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 2.2e-49 200.7 337 42.4
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 5.3e-48 196.1 459 37.7
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 1.3e-46 191.4 344 42.7
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 2.5e-45 187.2 334 42.5
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 3.2e-45 186.8 381 41.5
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 3.2e-45 186.8 435 34.7
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 4.7e-44 183.0 352 41.2
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 4.7e-44 183.0 351 39.9
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 4.0e-43 179.9 493 34.1
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 4.0e-43 179.9 414 36.2
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 3.4e-42 176.8 328 41.5
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 4.4e-42 176.4 353 40.5
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 7.5e-42 175.6 421 34.4
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 1.7e-41 174.5 354 40.4
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 3.1e-40 170.2 487 34.1
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 5.4e-40 169.5 301 40.2
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 7.0e-40 169.1 427 36.8
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 1.3e-38 164.9 270 43.0
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.3e-38 164.9 270 43.0
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.3e-38 164.9 270 43.0
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 1.7e-38 164.5 256 44.5
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 5.0e-38 162.9 417 35.3
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 1.1e-37 161.8 369 35.0
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.6e-36 157.9 338 41.4
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 3.0e-35 153.7 339 38.1
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 4.0e-35 153.3 340 35.9
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 6.8e-35 152.5 326 36.2
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 6.8e-35 152.5 412 34.2
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 1.2e-34 151.8 326 36.2
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 1.5e-34 151.4 350 35.4
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 4.4e-34 149.8 325 36.6
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 5.7e-34 149.4 325 36.6
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 2.2e-33 147.5 366 34.7
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 2.2e-33 147.5 327 35.8
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 2.2e-33 147.5 448 32.8
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 2.8e-33 147.1 325 36.0
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 1.1e-32 145.2 387 34.6
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.4e-32 144.8 463 32.0
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 1.4e-32 144.8 353 35.1
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 2.4e-32 144.1 348 34.5
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 2.4e-32 144.1 378 34.7
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 7.0e-32 142.5 391 33.8
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 7.0e-32 142.5 288 38.9
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 7.0e-32 142.5 545 30.5
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 9.2e-32 142.1 347 35.2
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 1.2e-31 141.7 243 42.0
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 1.6e-31 141.4 422 33.4
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 3.5e-31 140.2 349 34.4
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 4.5e-31 139.8 543 30.9
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 5.9e-31 139.4 417 34.1
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 6.6e-30 136.0 374 34.0
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 8.6e-30 135.6 357 35.9
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 2.5e-29 134.0 484 31.4
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 4.3e-29 133.3 327 35.5
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 6.1e-28 129.4 611 27.5
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 6.1e-28 129.4 349 34.1
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.8e-27 127.9 339 31.3
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 3.0e-27 127.1 276 37.0
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 4.0e-27 126.7 338 36.1
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 5.2e-27 126.3 408 31.6
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 2.0e-26 124.4 478 30.8
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 2.9e-25 120.6 180 47.8
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 9.2e-24 115.5 307 35.2
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 2.0e-23 114.4 264 37.5
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 2.7e-23 114.0 321 35.8
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 2.7e-23 114.0 374 32.1
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 3.5e-23 113.6 304 34.2
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 4.6e-23 113.2 485 31.1
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 7.8e-23 112.5 373 33.2
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 6.6e-22 109.4 122 53.3
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 6.6e-22 109.4 122 53.3
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 1.1e-21 108.6 312 34.3
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 4.3e-21 106.7 410 28.3
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 9.5e-21 105.5 253 37.9
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 9.5e-21 105.5 369 27.6
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 1.6e-20 104.8 257 34.6
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 2.8e-20 104.0 278 34.9
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 2.3e-19 100.9 379 30.3
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 4.0e-19 100.1 425 28.5
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 5.2e-19 99.8 311 31.8
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 6.8e-19 99.4 428 28.0
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 4.4e-18 96.7 428 28.0
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 9.8e-18 95.5 611 25.2
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.7e-17 94.7 237 35.4
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 1.7e-17 94.7 167 45.5
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.4e-16 91.7 396 28.0
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 7.0e-16 89.4 405 29.9
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 9.2e-16 89.0 125 48.8
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 2.0e-15 87.8 399 27.8
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 1.7e-14 84.7 211 33.6
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.1e-13 82.0 589 25.3
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 1.2e-12 78.6 368 29.3
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.6e-12 78.2 255 31.4
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.4e-11 75.1 611 24.2
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 4.0e-11 73.6 330 29.1
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 4.0e-11 73.6 350 30.0
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 6.8e-11 72.8 389 27.0
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.2e-10 72.0 375 26.9
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.0e-10 71.2 611 23.7
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 1.7e-09 68.2 268 30.2
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 2.2e-09 67.8 80 50.0
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 1.1e-08 65.5 203 32.0
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.0e-06 57.4 155 31.0
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 5.1e-06 56.6 151 32.5
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 8.6e-06 55.8 209 24.9


User provided reference genes

Program Settings