Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 3.3e-68 261.5 128 100.0
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.1e-66 256.5 128 96.9
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 3.5e-62 241.5 129 91.5
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 8.7e-61 236.9 128 88.3
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.1e-60 236.5 128 88.3
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 9.0e-50 200.3 130 75.4
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-49 199.9 127 74.8
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.2e-49 199.9 114 80.7
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 2.6e-49 198.7 117 78.6
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 3.4e-49 198.4 130 73.1
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 3.4e-49 198.4 125 75.2
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 5.8e-49 197.6 130 74.6
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 5.8e-49 197.6 126 76.2
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.8e-49 197.6 126 76.2
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 5.8e-49 197.6 125 73.6
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 7.6e-49 197.2 126 76.2
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 7.6e-49 197.2 117 77.8
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 1.3e-48 196.4 119 76.5
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.7e-48 196.1 131 71.0
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.7e-48 196.1 131 72.5
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.7e-48 196.1 130 71.5
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 2.2e-48 195.7 119 74.8
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 2.2e-48 195.7 119 74.8
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 2.2e-48 195.7 119 74.8
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.2e-48 195.7 130 70.8
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.9e-48 195.3 130 70.8
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.9e-48 195.3 126 74.6
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 2.9e-48 195.3 115 77.4
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 2.9e-48 195.3 127 74.0
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 2.9e-48 195.3 120 75.8
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 3.8e-48 194.9 131 69.5
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 3.8e-48 194.9 130 69.2
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 3.8e-48 194.9 127 75.6
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 5.0e-48 194.5 132 70.5
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 5.0e-48 194.5 134 71.6
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 6.5e-48 194.1 115 80.0
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 6.5e-48 194.1 130 71.5
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 6.5e-48 194.1 130 71.5
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.4e-47 193.0 130 69.2
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.4e-47 193.0 130 69.2
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.4e-47 193.0 130 69.2
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.4e-47 193.0 130 71.5
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 2.5e-47 192.2 130 70.0
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 2.5e-47 192.2 125 71.2
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 2.5e-47 192.2 131 71.0
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 3.2e-47 191.8 130 71.5
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 3.2e-47 191.8 121 73.6
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.2e-47 191.8 130 68.5
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 4.2e-47 191.4 115 79.1
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 5.5e-47 191.0 130 69.2
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 5.5e-47 191.0 126 70.6
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 7.1e-47 190.7 125 71.2
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 7.1e-47 190.7 125 71.2
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 7.1e-47 190.7 130 69.2
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 7.1e-47 190.7 130 70.8
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 7.1e-47 190.7 125 72.8
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 9.3e-47 190.3 129 69.0
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 9.3e-47 190.3 115 76.5
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 9.3e-47 190.3 130 68.5
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 9.3e-47 190.3 115 77.4
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.2e-46 189.9 126 71.4
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.2e-46 189.9 130 68.5
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 1.2e-46 189.9 118 76.3
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 1.2e-46 189.9 130 67.7
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.6e-46 189.5 115 77.4
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.1e-46 189.1 130 68.5
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.1e-46 189.1 120 72.5
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 2.1e-46 189.1 120 74.2
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.7e-46 188.7 131 67.9
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.7e-46 188.7 130 68.5
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 3.5e-46 188.3 130 68.5
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 4.6e-46 188.0 128 69.5
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 4.6e-46 188.0 130 70.0
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.6e-46 188.0 130 67.7
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 6.1e-46 187.6 131 67.2
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 6.1e-46 187.6 115 77.4
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 6.1e-46 187.6 129 69.0
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 6.1e-46 187.6 130 67.7
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 7.9e-46 187.2 125 69.6
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.0e-45 186.8 131 67.9
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.3e-45 186.4 117 71.8
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.3e-45 186.4 130 67.7
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 1.8e-45 186.0 126 69.0
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.8e-45 186.0 130 66.2
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.3e-45 185.7 125 68.8
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.0e-45 185.3 125 71.2
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.0e-45 185.3 125 68.0
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 5.1e-45 184.5 131 66.4
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 6.7e-45 184.1 130 65.4
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.5e-44 183.0 130 70.0
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.9e-44 182.6 127 66.1
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.9e-44 182.6 117 72.6
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.5e-44 182.2 129 68.2
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 4.3e-44 181.4 133 65.4
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.3e-44 181.4 133 65.4
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 4.3e-44 181.4 133 65.4
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 4.3e-44 181.4 120 71.7
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 4.3e-44 181.4 131 66.4
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 4.3e-44 181.4 130 66.2
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 5.7e-44 181.0 132 66.7
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 7.4e-44 180.6 130 63.8
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 9.7e-44 180.3 133 64.7
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 9.7e-44 180.3 117 69.2
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.3e-43 179.9 129 65.9
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.3e-43 179.9 134 65.7
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 1.3e-43 179.9 133 63.9
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.6e-43 179.5 140 64.3
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 2.2e-43 179.1 133 63.9
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 2.2e-43 179.1 133 63.9
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 2.2e-43 179.1 133 63.9
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.8e-43 178.7 133 63.9
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.8e-43 178.7 116 71.6
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 2.8e-43 178.7 132 66.7
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.7e-43 178.3 133 63.2
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 4.8e-43 177.9 129 64.3
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 4.8e-43 177.9 112 69.6
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 4.8e-43 177.9 112 69.6
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 6.3e-43 177.6 131 65.6
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 8.2e-43 177.2 131 65.6
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 8.2e-43 177.2 131 65.6
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 8.2e-43 177.2 131 65.6
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 8.2e-43 177.2 132 65.2
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 1.1e-42 176.8 131 64.9
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.4e-42 176.4 127 64.6
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.4e-42 176.4 129 63.6
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.4e-42 176.4 130 67.7
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 3.1e-42 175.3 130 63.8
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.1e-42 174.9 130 65.4
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 5.3e-42 174.5 114 71.9
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 9.0e-42 173.7 108 71.3
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.5e-41 172.9 125 64.0
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.6e-41 172.2 119 67.2
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.3e-40 169.9 121 66.9
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 2.2e-40 169.1 128 60.9
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.9e-40 168.7 113 69.9
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.9e-40 168.7 130 63.8
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 6.5e-40 167.5 120 64.2
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.9e-39 166.0 112 68.8
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 4.2e-39 164.9 123 66.7
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 5.5e-39 164.5 120 62.5
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 9.4e-39 163.7 122 65.6
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 4.6e-38 161.4 123 65.0
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.0e-37 160.2 138 60.9
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 3.0e-37 158.7 122 62.3
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 3.9e-37 158.3 129 58.1
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 8.8e-37 157.1 78 98.7
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 5.7e-36 154.5 124 61.3
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 9.7e-36 153.7 131 55.7
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 6.3e-35 151.0 91 73.6
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 4.5e-33 144.8 124 61.3
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.6e-30 136.3 123 53.7
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.1e-26 122.1 85 67.1
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 6.7e-21 104.4 64 70.3
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 2.6e-20 102.4 56 89.3
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.4e-20 101.7 70 70.0
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 8.2e-19 97.4 77 59.7
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.4e-18 95.9 60 71.7
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.6e-17 92.4 79 55.7
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 5.9e-17 91.3 70 57.1
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.9e-15 86.3 76 50.0
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.7e-11 73.2 50 64.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 6.3e-11 71.2 95 33.7
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 8.5e-08 60.8 45 64.4
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.5e-07 60.1 51 54.9


User provided reference genes

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