Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 2.8e-185 651.7 321 100.0
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 2.8e-164 582.0 287 99.7
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.4e-160 569.7 287 97.6
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 4.4e-154 548.1 287 93.0
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.7e-148 528.1 287 89.9
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.7e-142 509.6 312 82.1
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 4.2e-136 488.4 290 83.8
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.2e-119 433.7 290 74.1
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 2.4e-115 419.5 288 71.9
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 4.2e-112 408.7 291 72.9
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.1e-109 400.6 290 71.0
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 4.8e-108 395.2 282 70.2
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 8.2e-108 394.4 294 69.0
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 6.9e-107 391.3 294 67.7
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.9e-104 383.3 283 68.2
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 3.2e-104 382.5 293 64.2
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 3.2e-104 382.5 290 68.6
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 5.5e-104 381.7 294 63.9
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 7.2e-104 381.3 281 69.0
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 9.4e-104 380.9 327 61.2
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.2e-103 380.6 294 65.0
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 2.7e-103 379.4 299 63.9
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 6.1e-103 378.3 292 65.8
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 7.9e-103 377.9 293 63.8
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 3.7e-100 369.0 296 64.5
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.0e-98 363.2 296 62.2
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.9e-98 361.7 301 62.1
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 5.9e-98 361.7 282 67.7
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.3e-97 360.5 252 71.8
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.9e-96 356.7 284 62.0
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 2.5e-96 356.3 277 63.9
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 4.2e-96 355.5 268 67.2
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 7.2e-96 354.8 283 62.5
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 7.2e-96 354.8 271 64.2
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 9.4e-96 354.4 284 61.6
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 2.1e-95 353.2 284 63.4
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 4.7e-95 352.1 258 66.7
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 7.9e-95 351.3 277 63.9
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 7.9e-95 351.3 279 63.4
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.9e-94 349.0 312 58.3
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 2.6e-93 346.3 278 61.5
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.3e-93 345.9 289 62.3
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 3.3e-93 345.9 291 62.9
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 5.7e-93 345.1 275 62.5
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 7.4e-93 344.7 282 62.8
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.2e-92 343.2 288 60.1
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 2.8e-92 342.8 275 61.5
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.8e-92 342.8 269 63.2
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 3.7e-92 342.4 315 57.5
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 6.3e-92 341.7 267 63.7
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.8e-91 340.1 292 59.6
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 2.4e-91 339.7 281 61.9
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 2.4e-91 339.7 275 61.1
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.1e-91 339.3 321 55.1
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 5.3e-91 338.6 279 59.5
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 5.3e-91 338.6 298 58.7
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 5.3e-91 338.6 254 63.4
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 1.5e-90 337.0 292 58.2
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 2.0e-90 336.7 277 60.6
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.0e-90 336.7 275 63.3
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 5.9e-90 335.1 292 58.2
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 1.3e-89 334.0 284 59.9
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.2e-89 333.2 276 59.8
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 3.8e-89 332.4 294 59.9
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 5.0e-89 332.0 276 61.6
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 1.1e-88 330.9 295 57.6
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.1e-88 330.9 331 52.9
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.1e-88 330.9 292 58.6
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.9e-88 330.1 274 58.4
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 4.2e-88 328.9 281 60.9
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 7.2e-88 328.2 294 59.2
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 9.4e-88 327.8 272 59.9
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.2e-87 327.4 258 68.2
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.6e-87 327.0 162 98.8
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 3.6e-87 325.9 272 59.6
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 3.6e-87 325.9 284 58.8
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 3.6e-87 325.9 276 58.7
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 4.7e-87 325.5 309 53.4
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.0e-86 324.3 284 58.5
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 1.0e-86 324.3 284 58.5
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.0e-86 324.3 284 58.5
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.0e-86 324.3 284 58.5
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 1.4e-86 323.9 292 56.8
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 8.8e-86 321.2 287 55.7
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 1.1e-85 320.9 227 68.7
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.7e-84 317.0 281 57.7
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 3.7e-84 315.8 345 48.7
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 4.1e-83 312.4 270 59.6
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 7.0e-83 311.6 270 59.3
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 7.0e-83 311.6 270 59.3
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 7.0e-83 311.6 270 59.3
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.2e-82 310.8 294 57.8
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.1e-80 304.3 259 57.1
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.9e-80 303.5 289 57.1
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 2.1e-79 300.1 228 68.4
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 3.6e-79 299.3 226 68.6
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 4.7e-79 298.9 272 55.1
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.8e-78 297.0 281 55.5
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 8.8e-78 294.7 284 56.3
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 5.7e-77 292.0 253 59.3
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 4.8e-76 288.9 272 56.6
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 4.8e-76 288.9 451 40.6
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.4e-75 286.6 303 50.5
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 2.5e-72 276.6 273 55.3
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 4.7e-71 272.3 238 62.2
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 9.8e-69 264.6 243 58.4
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 4.1e-67 259.2 198 65.2
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 2.0e-66 256.9 271 49.8
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.5e-64 250.8 214 58.9
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 8.3e-60 235.0 231 50.2
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 8.3e-60 235.0 238 52.9
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 2.9e-57 226.5 176 65.3
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.1e-56 224.6 228 50.9
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 2.0e-53 213.8 189 56.6
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 5.4e-43 179.1 153 58.8
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.7e-42 176.8 127 67.7
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 3.5e-42 176.4 164 52.4
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 7.8e-42 175.3 215 48.4
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.9e-40 170.6 103 74.8
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.9e-40 170.6 149 54.4
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 9.2e-35 151.8 89 78.7
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 4.6e-34 149.4 111 66.7
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 7.8e-34 148.7 235 37.0
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 6.6e-33 145.6 115 63.5
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 9.6e-32 141.7 74 83.8
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 6.2e-31 139.0 74 81.1
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 4.6e-26 122.9 113 52.2
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 8.7e-25 118.6 86 67.4
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 8.7e-25 118.6 86 67.4
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.1e-24 118.2 74 75.7
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 1.1e-24 118.2 67 83.6
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 2.7e-18 97.1 71 62.0
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 4.3e-16 89.7 90 53.3
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 7.3e-16 89.0 134 39.6
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.4e-14 84.7 80 55.0
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 5.3e-14 82.8 43 83.7
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 1.5e-13 81.3 42 81.0
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 2.6e-13 80.5 72 56.9
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.3e-12 78.2 57 57.9
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.1e-11 75.1 46 71.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.4e-11 74.7 191 28.3
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 6.0e-10 69.3 84 48.8
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 2.3e-09 67.4 37 81.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.3e-07 61.6 186 30.1


User provided reference genes

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