Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 2.5e-47 191.8 99 100.0
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 2.5e-47 191.8 99 100.0
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 9.4e-47 189.9 97 100.0
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 7.5e-44 180.3 99 92.9
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 3.7e-43 177.9 95 94.7
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 8.3e-43 176.8 99 90.9
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 2.4e-42 175.3 99 89.9
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 7.0e-42 173.7 95 91.6
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 4.0e-37 157.9 95 81.1
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 5.2e-37 157.5 99 77.8
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 5.2e-37 157.5 99 77.8
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 5.2e-37 157.5 99 79.8
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 6.8e-37 157.1 99 77.8
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 6.8e-37 157.1 99 77.8
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.2e-36 156.4 99 79.8
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 1.2e-36 156.4 99 78.8
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 2.6e-36 155.2 99 78.8
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 3.4e-36 154.8 99 77.8
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 4.4e-36 154.5 99 78.8
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 4.4e-36 154.5 99 78.8
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 7.5e-36 153.7 99 78.8
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 9.8e-36 153.3 99 76.8
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 9.8e-36 153.3 99 76.8
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 1.7e-35 152.5 97 77.3
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 2.2e-35 152.1 98 77.6
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 2.2e-35 152.1 99 75.8
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 3.7e-35 151.4 93 80.6
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 4.9e-35 151.0 97 76.3
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 1.4e-34 149.4 99 73.7
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 1.4e-34 149.4 99 73.7
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 1.4e-34 149.4 99 74.7
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 1.4e-34 149.4 99 74.7
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 2.4e-34 148.7 99 74.7
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 2.4e-34 148.7 99 75.8
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 3.1e-34 148.3 99 74.7
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 3.1e-34 148.3 99 72.7
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 3.1e-34 148.3 99 72.7
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.1e-34 147.9 99 73.7
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 4.1e-34 147.9 99 73.7
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 5.4e-34 147.5 99 73.7
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 7.0e-34 147.1 99 73.7
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 7.0e-34 147.1 99 73.7
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 7.0e-34 147.1 99 72.7
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 9.2e-34 146.7 99 71.7
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 1.2e-33 146.4 99 72.7
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 2.7e-33 145.2 93 76.3
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 3.5e-33 144.8 95 72.6
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 3.5e-33 144.8 95 73.7
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.5e-33 144.4 99 71.7
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.5e-33 144.4 99 73.7
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 4.5e-33 144.4 97 71.1
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 4.5e-33 144.4 99 70.7
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 5.9e-33 144.1 99 70.7
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 7.8e-33 143.7 95 75.8
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.0e-32 143.3 93 75.3
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.7e-32 142.5 99 72.7
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 1.7e-32 142.5 99 69.7
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 2.3e-32 142.1 99 69.7
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 2.3e-32 142.1 99 68.7
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 2.3e-32 142.1 95 72.6
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 2.9e-32 141.7 99 69.7
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 2.9e-32 141.7 97 70.1
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 3.8e-32 141.4 120 64.2
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 3.8e-32 141.4 95 74.7
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 5.0e-32 141.0 99 67.7
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 5.0e-32 141.0 99 68.7
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 5.0e-32 141.0 99 68.7
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 6.6e-32 140.6 94 74.5
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 6.6e-32 140.6 99 67.7
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 8.6e-32 140.2 95 70.5
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 8.6e-32 140.2 98 70.4
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.1e-31 139.8 99 68.7
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 1.5e-31 139.4 99 67.7
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 1.5e-31 139.4 99 67.7
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 1.9e-31 139.0 99 68.7
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 1.9e-31 139.0 99 68.7
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 2.5e-31 138.7 99 67.7
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 3.3e-31 138.3 97 68.0
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 3.3e-31 138.3 95 70.5
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 4.3e-31 137.9 99 67.7
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 4.3e-31 137.9 99 67.7
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 7.3e-31 137.1 99 67.7
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 9.5e-31 136.7 99 66.7
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 9.5e-31 136.7 99 73.7
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 1.2e-30 136.3 91 70.3
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 3.6e-30 134.8 104 64.4
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 8.0e-30 133.7 99 65.7
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 8.0e-30 133.7 99 64.6
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 8.0e-30 133.7 99 63.6
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 1.0e-29 133.3 99 63.6
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 1.0e-29 133.3 99 63.6
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 1.0e-29 133.3 99 63.6
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 1.0e-29 133.3 99 63.6
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.0e-29 133.3 113 61.1
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 1.4e-29 132.9 92 66.3
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 1.4e-29 132.9 98 62.2
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.3e-29 132.1 99 65.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 2.3e-29 132.1 88 71.6
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 3.0e-29 131.7 99 64.6
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 4.0e-29 131.3 99 63.6
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 4.0e-29 131.3 99 63.6
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 5.2e-29 131.0 95 65.3
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 5.2e-29 131.0 99 63.6
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 8.9e-29 130.2 99 65.7
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 8.9e-29 130.2 99 61.6
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 8.9e-29 130.2 99 61.6
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 8.9e-29 130.2 99 61.6
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 8.9e-29 130.2 99 62.6
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 1.5e-28 129.4 95 63.2
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 1.5e-28 129.4 99 61.6
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 2.6e-28 128.6 95 64.2
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 2.6e-28 128.6 99 60.6
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 5.7e-28 127.5 98 59.2
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 1.3e-27 126.3 95 63.2
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 1.3e-27 126.3 91 68.1
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 1.7e-27 125.9 95 63.2
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 4.9e-27 124.4 99 58.6
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 3.2e-26 121.7 96 61.5
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 4.1e-26 121.3 146 49.3
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 2.0e-25 119.0 98 59.2
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 1.0e-24 116.7 102 56.9
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.7e-24 115.9 89 62.9
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 2.3e-24 115.5 135 47.4
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 3.0e-24 115.2 71 74.6
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.2e-22 109.8 70 72.9
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 2.8e-22 108.6 71 73.2
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 2.8e-22 108.6 69 73.9
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 6.2e-22 107.5 78 66.7
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 3.1e-21 105.1 70 70.0
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 5.2e-21 104.4 91 57.1
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 6.8e-21 104.0 61 77.0
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 6.8e-21 104.0 91 54.9
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 8.9e-21 103.6 66 74.2
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 3.4e-20 101.7 64 75.0
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 1.3e-19 99.8 66 71.2
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 8.3e-19 97.1 68 63.2
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 1.1e-18 96.7 87 55.2
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 4.1e-18 94.7 66 63.6
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 4.1e-18 94.7 67 65.7
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 7.0e-18 94.0 95 63.2
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 2.7e-17 92.0 64 64.1
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 3.5e-17 91.7 68 61.8
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 5.0e-16 87.8 64 65.6
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 9.5e-15 83.6 96 42.7
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 2.8e-14 82.0 64 57.8
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 6.8e-13 77.4 90 40.0
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 3.2e-10 68.6 61 52.5
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 3.9e-08 61.6 81 38.3


User provided reference genes

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