Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.9e-74 282.3 134 100.0
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 1.6e-60 236.1 115 96.5
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 5.2e-56 221.1 115 92.2
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.7e-51 206.1 114 85.1
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 6.5e-51 204.1 115 82.6
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 3.0e-48 195.3 115 79.1
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 2.0e-44 182.6 131 67.2
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.0e-43 180.3 118 72.9
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.3e-43 179.9 115 72.2
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.5e-42 176.4 122 67.2
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.5e-42 176.4 115 70.4
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.5e-42 176.4 115 70.4
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.9e-42 176.0 113 72.6
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 2.5e-42 175.6 112 73.2
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 2.5e-42 175.6 118 72.0
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 4.2e-42 174.9 115 71.3
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 4.2e-42 174.9 115 69.6
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 5.6e-42 174.5 114 70.2
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 7.2e-42 174.1 115 68.7
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 7.2e-42 174.1 115 68.7
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 7.2e-42 174.1 115 68.7
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 7.2e-42 174.1 115 67.8
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 9.5e-42 173.7 111 73.0
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 9.5e-42 173.7 115 67.8
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 2.1e-41 172.6 120 69.2
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 3.6e-41 171.8 110 71.8
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 4.7e-41 171.4 108 73.1
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 6.1e-41 171.0 115 67.0
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 8.0e-41 170.6 116 70.7
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 1.0e-40 170.2 115 67.8
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.4e-40 169.9 115 66.1
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.4e-40 169.9 115 67.8
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.4e-40 169.9 115 67.8
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.4e-40 169.9 115 67.8
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.8e-40 169.5 110 69.1
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.8e-40 169.5 108 72.2
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.8e-40 169.5 113 67.3
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 1.8e-40 169.5 115 67.0
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 2.3e-40 169.1 108 72.2
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 2.3e-40 169.1 115 65.2
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 3.0e-40 168.7 115 67.0
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 3.0e-40 168.7 115 67.0
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 3.0e-40 168.7 115 66.1
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 4.0e-40 168.3 117 69.2
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 5.2e-40 167.9 108 68.5
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 5.2e-40 167.9 108 68.5
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 5.2e-40 167.9 124 62.1
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 8.9e-40 167.2 107 70.1
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.5e-39 166.4 115 68.7
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.5e-39 166.4 109 69.7
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.0e-39 166.0 115 67.8
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.0e-39 166.0 118 67.8
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 2.6e-39 165.6 111 67.6
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 3.4e-39 165.2 115 66.1
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 3.4e-39 165.2 108 72.2
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 4.4e-39 164.9 111 64.9
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 4.4e-39 164.9 115 65.2
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 4.4e-39 164.9 115 65.2
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 5.7e-39 164.5 111 68.5
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 5.7e-39 164.5 116 66.4
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 5.7e-39 164.5 113 68.1
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 7.5e-39 164.1 108 66.7
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 7.5e-39 164.1 115 63.5
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 7.5e-39 164.1 124 61.3
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 1.3e-38 163.3 115 65.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 1.3e-38 163.3 108 67.6
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.3e-38 163.3 112 66.1
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.7e-38 162.9 114 65.8
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.7e-38 162.9 117 67.5
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.7e-38 162.9 108 67.6
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.7e-38 162.9 108 67.6
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.7e-38 162.9 108 69.4
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.7e-38 162.9 108 69.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.2e-38 162.5 113 67.3
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 2.2e-38 162.5 108 68.5
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 2.2e-38 162.5 114 66.7
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 2.9e-38 162.2 113 63.7
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 2.9e-38 162.2 109 66.1
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 3.7e-38 161.8 108 67.6
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 6.4e-38 161.0 112 67.0
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.4e-38 161.0 108 66.7
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 6.4e-38 161.0 118 67.8
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 6.4e-38 161.0 108 65.7
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 6.4e-38 161.0 108 65.7
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 8.3e-38 160.6 108 67.6
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 8.3e-38 160.6 108 67.6
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 8.3e-38 160.6 108 64.8
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.1e-37 160.2 114 64.9
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.1e-37 160.2 108 66.7
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.1e-37 160.2 114 65.8
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 1.4e-37 159.8 115 64.3
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.4e-37 159.8 108 68.5
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.8e-37 159.5 116 64.7
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.8e-37 159.5 112 67.9
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 3.2e-37 158.7 108 65.7
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 4.1e-37 158.3 108 66.7
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 4.1e-37 158.3 108 68.5
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 5.4e-37 157.9 112 67.0
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 5.4e-37 157.9 108 64.8
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.4e-37 157.9 108 65.7
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 7.0e-37 157.5 112 67.0
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 7.0e-37 157.5 108 66.7
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 7.0e-37 157.5 112 67.0
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 7.0e-37 157.5 112 67.0
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 7.0e-37 157.5 112 67.0
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 9.2e-37 157.1 108 64.8
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 9.2e-37 157.1 108 66.7
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 9.2e-37 157.1 128 61.7
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 9.2e-37 157.1 116 62.1
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.2e-36 156.8 107 64.5
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 2.7e-36 155.6 108 66.7
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 2.7e-36 155.6 112 66.1
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.7e-36 155.6 112 63.4
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 3.5e-36 155.2 108 63.9
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 4.6e-36 154.8 117 65.0
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 7.8e-36 154.1 148 52.0
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.0e-35 153.7 120 60.8
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.3e-35 153.3 111 64.0
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.7e-35 152.9 108 64.8
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.7e-35 152.9 108 64.8
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.7e-35 152.9 107 64.5
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 2.3e-35 152.5 108 66.7
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.9e-35 152.1 108 66.7
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.1e-34 150.2 99 67.7
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.9e-34 149.4 114 62.3
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 2.5e-34 149.1 117 61.5
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.2e-33 146.7 117 56.4
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 1.6e-33 146.4 108 63.9
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 3.1e-32 142.1 107 60.7
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.1e-32 142.1 176 44.3
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 3.4e-31 138.7 108 58.3
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 3.4e-31 138.7 107 56.1
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 4.4e-31 138.3 106 57.5
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 2.2e-30 136.0 108 57.4
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.4e-29 133.3 107 57.9
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.2e-29 132.1 118 56.8
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 2.0e-28 129.4 112 51.8
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 4.6e-28 128.3 122 51.6
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 7.3e-26 120.9 67 86.6
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.8e-24 116.3 79 67.1
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 5.2e-24 114.8 67 83.6
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 2.9e-22 109.0 119 53.8
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 8.3e-22 107.5 68 80.9
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 3.5e-20 102.1 110 50.9
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 9.5e-18 94.0 68 64.7
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 9.5e-18 94.0 66 59.1
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 9.5e-18 94.0 109 44.0
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.1e-16 90.5 59 72.9
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 5.8e-15 84.7 86 54.7
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.6e-15 84.3 63 58.7
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 2.9e-14 82.4 115 39.1
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 2.9e-14 82.4 61 62.3
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.1e-13 78.6 47 72.3
PGSC0003DMG400005351 Solanum tuberosum HOM05D000190 ORTHO05D030681 4.1e-13 78.6 60 65.0
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 5.4e-13 78.2 48 75.0
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 5.4e-13 78.2 48 75.0
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 6.0e-12 74.7 48 68.8
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.5e-10 70.1 41 70.7
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 7.3e-10 67.8 57 56.1
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 2.8e-09 65.9 41 68.3
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 2.0e-07 59.7 126 30.2
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 3.4e-07 58.9 41 63.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.7e-06 56.6 41 63.4


User provided reference genes

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