Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 9.2e-87 323.6 166 100.0
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 2.7e-86 322.0 166 99.4
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 1.8e-82 309.3 166 95.2
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 3.0e-69 265.4 170 81.8
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 3.9e-69 265.0 166 83.7
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 5.4e-63 244.6 168 77.4
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 3.3e-52 208.8 158 68.4
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 9.6e-52 207.2 159 68.6
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 9.6e-52 207.2 112 89.3
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 1.4e-50 203.4 159 67.3
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 9.0e-50 200.7 156 64.7
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 1.5e-49 199.9 159 66.7
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 2.0e-49 199.5 156 66.7
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 5.8e-49 198.0 156 62.2
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 9.9e-49 197.2 153 66.0
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 9.9e-49 197.2 148 66.2
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 6.4e-48 194.5 156 66.7
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.4e-47 193.4 141 67.4
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.9e-47 193.0 156 66.0
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.4e-47 192.6 147 63.9
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 2.4e-47 192.6 162 59.9
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 3.2e-47 192.2 144 65.3
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 9.3e-47 190.7 156 64.1
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.2e-46 190.3 142 65.5
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 1.6e-46 189.9 141 64.5
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 2.1e-46 189.5 154 62.3
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 3.5e-46 188.7 152 60.5
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 6.0e-46 188.0 141 62.4
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 7.8e-46 187.6 148 62.2
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 7.8e-46 187.6 145 62.8
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 1.3e-45 186.8 141 60.3
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 1.7e-45 186.4 159 61.0
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 3.0e-45 185.7 141 63.8
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 3.0e-45 185.7 161 57.8
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 5.1e-45 184.9 160 56.9
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 6.6e-45 184.5 144 61.1
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 1.1e-44 183.7 141 60.3
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 1.5e-44 183.3 141 63.1
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.9e-44 183.0 141 63.1
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.9e-44 183.0 148 60.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.9e-44 183.0 148 58.8
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 1.9e-44 183.0 156 61.5
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 1.9e-44 183.0 157 60.5
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 4.3e-44 181.8 142 62.0
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 7.3e-44 181.0 160 56.9
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 7.3e-44 181.0 162 55.6
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 9.6e-44 180.6 165 55.2
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-43 180.3 146 58.9
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 1.3e-43 180.3 150 60.7
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 1.3e-43 180.3 143 60.8
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.3e-43 180.3 159 59.7
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.1e-43 179.5 164 54.3
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 2.8e-43 179.1 160 56.2
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 3.6e-43 178.7 144 61.8
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 4.8e-43 178.3 159 62.3
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 6.2e-43 177.9 148 57.4
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 6.2e-43 177.9 158 57.0
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 6.2e-43 177.9 144 59.7
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 6.2e-43 177.9 142 56.3
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 8.1e-43 177.6 145 58.6
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 8.1e-43 177.6 163 54.0
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 8.1e-43 177.6 162 55.6
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 8.1e-43 177.6 142 60.6
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 8.1e-43 177.6 158 55.7
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.1e-42 177.2 161 56.5
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 1.4e-42 176.8 151 57.6
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 1.4e-42 176.8 156 56.4
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 1.4e-42 176.8 155 58.1
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.4e-42 176.8 159 60.4
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 1.8e-42 176.4 142 60.6
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 2.4e-42 176.0 136 63.2
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 4.0e-42 175.3 154 53.9
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 5.3e-42 174.9 157 54.1
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 5.3e-42 174.9 150 60.0
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 5.3e-42 174.9 141 59.6
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 5.3e-42 174.9 155 58.7
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 6.9e-42 174.5 158 57.0
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 9.0e-42 174.1 156 56.4
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 1.2e-41 173.7 159 55.3
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 1.5e-41 173.3 165 54.5
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 2.0e-41 172.9 134 61.2
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 2.6e-41 172.6 142 57.7
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 4.5e-41 171.8 129 69.0
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 7.6e-41 171.0 157 55.4
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 9.9e-41 170.6 141 58.2
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 9.9e-41 170.6 149 55.7
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 1.7e-40 169.9 155 54.2
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 2.2e-40 169.5 162 55.6
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 2.9e-40 169.1 158 53.2
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.9e-40 168.3 135 60.0
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 8.4e-40 167.5 157 54.1
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 3.2e-39 165.6 157 54.1
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 4.2e-39 165.2 136 59.6
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 5.4e-39 164.9 147 56.5
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 7.1e-39 164.5 149 52.3
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 3.5e-38 162.2 142 54.2
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 6.0e-38 161.4 159 54.7
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 3.0e-37 159.1 139 52.5
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 3.9e-37 158.7 158 53.2
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 1.9e-36 156.4 142 51.4
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 2.5e-36 156.0 130 62.3
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 3.7e-35 152.1 130 56.9
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 3.7e-35 152.1 161 50.3
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 5.8e-33 144.8 149 49.7
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 2.2e-32 142.9 142 53.5
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.9e-31 139.8 136 54.4
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 4.2e-31 138.7 114 60.5
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.6e-30 136.7 115 59.1
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 6.0e-30 134.8 133 57.1
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 1.0e-29 134.0 143 51.0
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 1.3e-27 127.1 152 46.1
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.8e-27 125.2 142 45.1
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 1.2e-25 120.6 134 42.5
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.5e-25 120.2 138 43.5
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 1.0e-24 117.5 138 44.9
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 6.5e-24 114.8 127 41.7
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 2.5e-23 112.8 76 68.4
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 6.7e-21 104.8 110 49.1
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 4.8e-19 98.6 91 54.9
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.1e-18 97.4 113 42.5
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 2.0e-17 93.2 72 62.5
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 3.4e-17 92.4 152 36.8
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 2.2e-16 89.7 89 49.4
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 2.9e-16 89.4 136 35.3
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 1.1e-15 87.4 64 64.1
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 2.5e-15 86.3 139 36.0
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 2.3e-13 79.7 88 44.3
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 1.5e-09 67.0 76 44.7
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 2.6e-09 66.2 71 47.9
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 3.4e-09 65.9 41 61.0
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 4.2e-07 58.9 52 53.8


User provided reference genes

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