Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.6e-49 199.1 102 100.0
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.6e-41 172.6 101 88.1
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 6.7e-40 167.2 87 96.6
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 4.7e-25 117.9 105 65.7
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.6e-20 102.8 102 59.8
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.5e-15 84.0 95 58.9
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.4e-13 79.7 93 49.5
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.2e-12 76.6 97 51.5
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.3e-10 68.6 97 42.3
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 3.3e-10 68.6 77 50.6
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.3e-10 68.6 105 45.7
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.3e-10 68.6 97 43.3
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 4.3e-10 68.2 105 41.9
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 4.3e-10 68.2 58 58.6
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 5.6e-10 67.8 98 48.0
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 5.6e-10 67.8 86 45.3
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.3e-10 67.4 81 49.4
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 7.3e-10 67.4 105 42.9
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 9.5e-10 67.0 97 48.5
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 9.5e-10 67.0 73 46.6
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.2e-09 66.6 100 46.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.2e-09 66.6 100 46.0
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.6e-09 66.2 95 41.1
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.8e-09 65.5 40 67.5
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 2.8e-09 65.5 101 42.6
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 3.6e-09 65.1 92 43.5
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 3.6e-09 65.1 92 43.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.6e-09 65.1 97 43.3
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 3.6e-09 65.1 92 38.0
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.6e-09 65.1 81 48.1
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.6e-09 65.1 91 37.4
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.6e-09 65.1 62 51.6
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.7e-09 64.7 98 45.9
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 4.7e-09 64.7 97 41.2
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 6.2e-09 64.3 45 64.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.2e-09 64.3 91 38.5
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 6.2e-09 64.3 47 63.8
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 8.0e-09 63.9 83 49.4
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 8.0e-09 63.9 98 41.8
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 8.0e-09 63.9 81 48.1
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 8.0e-09 63.9 90 43.3
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-08 63.5 92 42.4
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.1e-08 63.5 92 42.4
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.4e-08 63.2 83 45.8
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.4e-08 63.2 94 43.6
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-08 63.2 91 37.4
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.4e-08 63.2 98 44.9
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-08 62.8 87 43.7
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.8e-08 62.8 83 41.0
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.3e-08 62.4 104 42.3
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.3e-08 62.4 97 41.2
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.3e-08 62.4 98 41.8
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.1e-08 62.0 92 40.2
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.1e-08 62.0 61 57.4
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 4.0e-08 61.6 45 62.2
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 4.0e-08 61.6 57 52.6
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.0e-08 61.6 87 44.8
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 4.0e-08 61.6 81 44.4
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 4.0e-08 61.6 81 44.4
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 5.2e-08 61.2 91 42.9
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.2e-08 61.2 97 41.2
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 6.8e-08 60.8 73 43.8
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 8.9e-08 60.5 98 41.8
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 8.9e-08 60.5 62 46.8
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 8.9e-08 60.5 92 46.7
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-07 60.1 85 41.2
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.2e-07 60.1 85 41.2
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.2e-07 60.1 90 42.2
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-07 60.1 41 58.5
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.2e-07 60.1 44 65.9
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.2e-07 60.1 100 36.0
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.2e-07 60.1 92 44.6
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-07 59.7 41 58.5
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-07 59.7 97 37.1
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-07 59.7 97 43.3
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.0e-07 59.3 60 46.7
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.0e-07 59.3 85 41.2
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.0e-07 59.3 40 65.0
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 2.0e-07 59.3 44 63.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-07 59.3 87 41.4
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.6e-07 58.9 98 41.8
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.6e-07 58.9 86 44.2
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 2.6e-07 58.9 98 34.7
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-07 58.9 39 61.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.6e-07 58.9 85 43.5
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.6e-07 58.9 95 40.0
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.6e-07 58.9 44 65.9
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.6e-07 58.9 102 41.2
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.6e-07 58.9 42 69.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.4e-07 58.5 86 40.7
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.4e-07 58.5 97 39.2
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.4e-07 58.5 97 39.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 4.4e-07 58.2 90 41.1
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.4e-07 58.2 97 42.3
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 4.4e-07 58.2 104 43.3
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.4e-07 58.2 86 39.5
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 4.4e-07 58.2 41 58.5
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.4e-07 58.2 58 53.4
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.8e-07 57.8 42 66.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.8e-07 57.8 42 66.7
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.8e-07 57.8 92 40.2
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.8e-07 57.8 99 42.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 5.8e-07 57.8 89 41.6
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 5.8e-07 57.8 55 54.5
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.8e-07 57.8 102 41.2
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 5.8e-07 57.8 96 36.5
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 7.5e-07 57.4 97 39.2
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 7.5e-07 57.4 98 36.7
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 7.5e-07 57.4 101 37.6
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 7.5e-07 57.4 97 41.2
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 7.5e-07 57.4 46 58.7
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 7.5e-07 57.4 39 61.5
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.8e-07 57.0 88 42.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.8e-07 57.0 98 35.7
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 9.8e-07 57.0 98 40.8
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 9.8e-07 57.0 83 34.9
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.8e-07 57.0 62 46.8
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-06 56.6 42 66.7
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.7e-06 56.2 103 35.0
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.7e-06 56.2 101 41.6
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.7e-06 56.2 39 59.0
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.7e-06 56.2 97 43.3
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.7e-06 56.2 62 51.6
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-06 55.8 101 39.6
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.2e-06 55.8 101 38.6
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.2e-06 55.8 41 58.5
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.2e-06 55.8 85 40.0
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.9e-06 55.5 103 39.8
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 2.9e-06 55.5 88 42.0
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.9e-06 55.5 88 42.0
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.9e-06 55.5 101 38.6
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.9e-06 55.5 92 40.2
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 2.9e-06 55.5 37 70.3
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 2.9e-06 55.5 62 45.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.9e-06 55.5 87 41.4
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.7e-06 55.1 86 39.5
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 3.7e-06 55.1 86 39.5
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 3.7e-06 55.1 98 35.7
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 3.7e-06 55.1 48 56.2
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 4.9e-06 54.7 41 58.5
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.4e-06 54.3 40 57.5
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 6.4e-06 54.3 41 53.7
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 6.4e-06 54.3 33 66.7
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.4e-06 54.3 98 39.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.3e-06 53.9 81 39.5
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 8.3e-06 53.9 83 34.9
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 8.3e-06 53.9 102 41.2
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 8.3e-06 53.9 81 38.3


User provided reference genes

Program Settings