Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.9e-232 807.7 408 100.0
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 5.7e-199 697.6 360 97.8
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.5e-178 629.0 360 87.5
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.1e-161 572.8 384 77.6
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.8e-161 572.4 360 80.8
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.2e-159 567.0 337 85.2
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 8.4e-134 481.1 372 65.3
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.3e-131 473.8 370 64.6
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.1e-130 470.7 373 64.1
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.8e-128 463.4 370 63.0
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.8e-128 463.4 250 93.6
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 9.7e-122 441.0 346 64.2
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.0e-114 416.8 374 56.1
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.3e-113 411.8 370 55.1
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.6e-111 406.4 370 54.1
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.3e-110 404.1 370 54.3
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 3.8e-110 402.5 370 54.3
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 5.0e-110 402.1 370 54.9
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 6.5e-110 401.7 370 55.1
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.1e-109 401.0 370 54.3
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.4e-109 400.6 375 52.8
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.6e-108 397.1 370 53.5
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.6e-108 397.1 370 52.7
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.6e-108 397.1 370 53.5
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.7e-108 396.4 323 64.1
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 4.7e-108 395.6 370 51.4
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.0e-107 394.4 370 53.2
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 1.0e-107 394.4 372 53.0
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.8e-107 393.7 370 53.0
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 6.7e-107 391.7 413 48.7
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 8.8e-107 391.3 370 53.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.1e-106 391.0 370 53.2
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.6e-106 389.8 370 50.8
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 2.6e-106 389.8 370 53.8
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 7.4e-106 388.3 371 51.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 9.7e-106 387.9 370 52.2
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 9.7e-106 387.9 371 52.3
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 3.7e-105 386.0 372 52.7
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 8.2e-105 384.8 370 51.4
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.4e-104 384.0 370 52.4
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.8e-104 383.6 371 52.0
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.4e-104 383.3 371 52.0
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 4.1e-104 382.5 371 51.5
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 5.3e-104 382.1 393 50.9
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 9.1e-104 381.3 361 52.4
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 1.6e-103 380.6 370 50.5
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.6e-103 379.8 370 51.6
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.6e-103 379.8 370 50.8
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 3.5e-103 379.4 371 50.9
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 3.5e-103 379.4 370 52.4
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 2.2e-102 376.7 370 51.1
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 3.8e-102 375.9 370 51.4
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.8e-102 375.9 370 50.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.0e-102 375.6 371 50.9
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.5e-101 373.2 371 49.9
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.5e-101 373.2 387 51.2
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 3.2e-101 372.9 370 51.1
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.2e-101 371.7 370 50.0
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 9.4e-101 371.3 374 50.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 9.4e-101 371.3 372 51.9
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.2e-100 370.9 375 52.3
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 2.7e-100 369.8 370 50.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.7e-100 369.8 370 49.7
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 3.6e-100 369.4 372 51.6
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 6.1e-100 368.6 370 50.5
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.8e-99 367.1 370 50.3
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 6.8e-99 365.2 375 49.1
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 8.8e-99 364.8 372 49.2
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 4.8e-97 359.0 375 51.5
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 6.3e-97 358.6 372 48.7
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 8.3e-97 358.2 353 51.8
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.4e-96 357.5 375 50.9
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.4e-96 356.7 381 50.4
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 3.1e-96 356.3 379 50.7
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 5.3e-96 355.5 381 49.9
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 5.3e-96 355.5 381 49.9
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 7.0e-96 355.1 376 50.3
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 9.1e-96 354.8 349 53.0
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.6e-95 354.0 379 50.4
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 2.0e-95 353.6 370 49.5
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.5e-95 352.8 367 48.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.5e-95 352.8 367 48.8
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 5.9e-95 352.1 364 50.3
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 7.7e-95 351.7 370 47.0
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 7.7e-95 351.7 360 48.6
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.3e-94 350.9 371 47.4
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.7e-94 350.5 380 49.5
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 2.9e-94 349.7 380 49.5
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.9e-94 349.7 378 48.9
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 2.9e-94 349.7 405 47.2
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 8.5e-94 348.2 385 48.6
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-93 347.4 381 49.1
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 2.5e-93 346.7 345 51.3
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 5.5e-93 345.5 374 48.7
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 7.2e-93 345.1 372 53.5
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 9.4e-93 344.7 377 48.3
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.4e-91 340.9 378 47.6
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.4e-91 340.9 347 49.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 8.8e-91 338.2 360 49.2
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.2e-90 337.8 374 46.5
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 3.4e-90 336.3 374 46.8
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.3e-89 334.3 355 49.0
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.7e-89 334.0 353 51.0
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 2.2e-89 333.6 362 49.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.4e-88 330.1 340 51.2
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.0e-88 328.6 321 52.0
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.7e-87 326.6 329 51.1
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 5.9e-87 325.5 356 46.9
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.7e-86 323.9 389 44.7
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.9e-85 320.5 357 49.0
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 7.2e-85 318.5 368 45.4
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 1.4e-83 314.3 332 50.9
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.8e-83 313.9 384 44.8
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.3e-83 313.5 360 45.0
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 6.8e-83 312.0 351 47.6
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 8.9e-83 311.6 324 48.8
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 2.0e-82 310.5 329 48.6
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.7e-81 306.2 372 44.1
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 3.2e-80 303.1 301 51.5
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 5.9e-79 298.9 300 50.7
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 2.3e-78 297.0 336 47.3
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.7e-73 280.8 373 40.8
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.3e-70 271.2 291 49.1
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.1e-64 251.5 336 41.4
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 8.6e-62 241.9 403 36.2
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 8.6e-62 241.9 382 36.4
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.8e-60 236.9 301 46.5
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 7.1e-56 222.2 269 46.8
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 3.0e-54 216.9 218 51.8
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 3.9e-54 216.5 482 31.7
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 5.1e-54 216.1 286 44.8
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.5e-53 214.5 389 33.7
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.3e-53 213.0 241 46.9
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 8.9e-51 205.3 328 35.4
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 7.8e-47 192.2 259 40.2
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.5e-45 187.2 191 48.2
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.8e-44 183.7 373 31.6
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.8e-43 181.0 232 44.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.4e-42 176.8 225 40.9
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 6.6e-38 162.5 246 41.1
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 7.3e-37 159.1 149 53.0
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.8e-35 154.5 138 48.6
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.9e-33 146.4 115 56.5
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.4e-32 144.8 205 42.0
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 4.6e-23 113.2 425 23.3
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 1.6e-20 104.8 71 63.4
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.1e-19 100.1 145 41.4
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.5e-18 98.2 205 29.3
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.1e-11 73.6 186 30.1
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 2.0e-10 71.2 73 49.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.4e-08 65.1 42 64.3
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 8.8e-06 55.8 60 48.3


User provided reference genes

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