Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 8.1e-79 297.0 146 100.0
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 8.1e-79 297.0 146 100.0
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 2.6e-77 292.0 146 97.3
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 4.3e-72 274.6 146 91.1
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 4.4e-69 264.6 146 85.6
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 2.1e-63 245.7 141 82.3
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 1.5e-61 239.6 144 81.2
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 3.4e-61 238.4 146 78.8
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 2.9e-60 235.3 146 78.1
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 2.9e-60 235.3 149 78.5
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 1.9e-59 232.6 147 78.2
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 5.4e-59 231.1 147 76.9
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 1.6e-58 229.6 144 77.8
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 1.6e-58 229.6 145 77.9
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 2.1e-58 229.2 149 75.2
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 2.1e-58 229.2 147 78.2
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 3.5e-58 228.4 143 76.2
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 3.5e-58 228.4 152 76.3
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 3.5e-58 228.4 141 77.3
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 4.6e-58 228.0 141 76.6
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 4.6e-58 228.0 145 76.6
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 6.0e-58 227.6 144 76.4
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 6.0e-58 227.6 144 76.4
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 6.0e-58 227.6 144 76.4
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 7.9e-58 227.3 149 73.8
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 7.9e-58 227.3 149 73.8
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 7.9e-58 227.3 146 76.7
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 1.3e-57 226.5 144 77.1
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 1.3e-57 226.5 147 74.8
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 1.8e-57 226.1 148 75.7
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 1.8e-57 226.1 148 75.7
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 2.3e-57 225.7 149 73.2
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 2.3e-57 225.7 144 75.0
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 2.3e-57 225.7 144 74.3
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 3.0e-57 225.3 144 74.3
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 3.0e-57 225.3 145 76.6
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 3.9e-57 224.9 148 75.0
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 6.7e-57 224.2 141 75.2
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 6.7e-57 224.2 149 73.2
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 6.7e-57 224.2 149 73.2
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 1.5e-56 223.0 141 74.5
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.9e-56 222.6 141 75.2
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 1.9e-56 222.6 144 75.7
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 2.5e-56 222.2 141 73.0
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 2.5e-56 222.2 147 74.1
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 3.3e-56 221.9 119 83.2
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 3.3e-56 221.9 142 73.9
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 4.3e-56 221.5 146 74.7
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 5.6e-56 221.1 141 75.2
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 5.6e-56 221.1 144 74.3
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 5.6e-56 221.1 147 72.8
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 7.4e-56 220.7 142 77.5
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 9.6e-56 220.3 143 74.8
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 9.6e-56 220.3 145 73.8
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 1.3e-55 219.9 147 72.8
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.6e-55 219.5 146 74.0
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.6e-55 219.5 146 74.0
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 1.6e-55 219.5 146 74.7
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 2.8e-55 218.8 144 73.6
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 2.8e-55 218.8 149 72.5
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 3.7e-55 218.4 138 74.6
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 3.7e-55 218.4 144 72.9
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 4.8e-55 218.0 149 73.8
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 8.1e-55 217.2 138 73.9
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 1.8e-54 216.1 113 84.1
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.8e-54 216.1 145 73.1
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 3.1e-54 215.3 144 74.3
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 4.0e-54 214.9 142 76.1
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 4.0e-54 214.9 145 74.5
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 1.2e-53 213.4 145 73.1
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 1.2e-53 213.4 144 73.6
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 2.6e-53 212.2 174 62.6
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 2.6e-53 212.2 145 71.7
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 4.5e-53 211.5 145 72.4
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 4.5e-53 211.5 148 74.3
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 4.5e-53 211.5 142 72.5
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 5.8e-53 211.1 145 71.0
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 7.6e-53 210.7 146 69.2
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 9.9e-53 210.3 144 74.3
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 9.9e-53 210.3 145 71.7
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 9.9e-53 210.3 146 71.9
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 1.7e-52 209.5 138 73.9
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 2.9e-52 208.8 113 81.4
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.9e-52 208.8 143 73.4
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 3.8e-52 208.4 146 67.8
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 3.8e-52 208.4 142 70.4
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.8e-52 208.4 143 72.7
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 4.9e-52 208.0 145 71.7
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 4.9e-52 208.0 148 70.3
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 6.4e-52 207.6 144 71.5
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.1e-51 206.8 142 72.5
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 1.4e-51 206.5 138 72.5
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 1.9e-51 206.1 145 71.7
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 2.4e-51 205.7 146 69.9
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 2.4e-51 205.7 143 72.7
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.2e-51 205.3 143 71.3
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 7.1e-51 204.1 142 71.1
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 9.3e-51 203.8 141 67.4
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 2.1e-50 202.6 122 79.5
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 3.0e-49 198.7 144 68.8
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 6.7e-49 197.6 139 69.8
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 8.7e-49 197.2 114 80.7
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 5.6e-48 194.5 116 76.7
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 2.6e-45 185.7 139 66.2
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 4.5e-45 184.9 137 68.6
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 4.5e-45 184.9 138 66.7
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.7e-44 183.0 87 93.1
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 2.5e-43 179.1 146 61.0
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 5.5e-43 177.9 149 61.1
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 5.5e-43 177.9 99 81.8
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 7.9e-42 174.1 89 86.5
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 3.9e-41 171.8 140 60.0
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 1.9e-40 169.5 117 70.9
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 7.4e-40 167.5 119 72.3
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 9.7e-40 167.2 117 73.5
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 2.6e-37 159.1 89 77.5
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 2.2e-36 156.0 120 64.2
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 3.8e-36 155.2 113 69.9
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.8e-33 146.4 113 67.3
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.9e-33 145.2 116 69.8
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 3.9e-33 145.2 116 66.4
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 2.5e-32 142.5 115 66.1
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 1.0e-28 130.6 88 70.5
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 1.2e-26 123.6 113 63.7
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 2.1e-26 122.9 149 49.7
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 1.8e-25 119.8 90 71.1
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 5.9e-21 104.8 125 45.6
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 3.0e-17 92.4 103 41.7
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 5.2e-17 91.7 79 64.6
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 6.7e-17 91.3 155 41.3
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 1.1e-16 90.5 90 54.4
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 1.2e-10 70.5 76 59.2
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.1e-10 68.2 69 58.0
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 1.0e-09 67.4 71 57.7


User provided reference genes

Program Settings