Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.1e-82 308.9 149 100.0
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.1e-82 308.9 149 100.0
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.3e-81 305.4 149 98.7
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 2.0e-77 292.4 150 94.0
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.0e-76 287.7 149 92.6
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.1e-75 286.6 148 92.6
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 9.4e-75 283.5 148 87.8
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 2.7e-74 282.0 148 87.8
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 3.6e-74 281.6 149 89.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.2e-72 276.6 148 87.2
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.8e-71 271.2 148 86.5
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.6e-69 266.2 139 87.8
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.0e-69 265.8 148 84.5
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.5e-67 259.6 148 79.7
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 3.6e-66 255.0 146 80.8
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.6e-66 255.0 144 80.6
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 6.1e-66 254.2 147 79.6
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 6.8e-65 250.8 149 78.5
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 1.4e-62 243.0 148 75.0
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 5.4e-62 241.1 149 75.2
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.6e-61 239.6 144 75.0
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.6e-61 239.6 148 75.0
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 2.7e-61 238.8 145 73.8
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 2.7e-61 238.8 144 75.0
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 3.5e-61 238.4 145 75.2
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 2.9e-60 235.3 149 75.8
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 2.9e-60 235.3 141 73.8
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.8e-60 235.0 138 76.8
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 5.0e-60 234.6 149 73.2
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 8.6e-60 233.8 143 72.7
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.1e-59 233.4 144 72.9
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.9e-59 232.6 141 73.0
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 4.3e-59 231.5 141 72.3
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 5.6e-59 231.1 143 72.7
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 7.3e-59 230.7 141 74.5
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 9.5e-59 230.3 147 68.7
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.2e-58 229.9 147 72.8
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 3.6e-58 228.4 153 69.3
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 6.1e-58 227.6 141 72.3
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 8.0e-58 227.3 146 71.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.8e-57 226.1 144 68.8
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.0e-57 225.3 148 69.6
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 6.8e-57 224.2 136 72.8
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 8.9e-57 223.8 142 73.2
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 2.0e-56 222.6 143 74.8
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.6e-56 222.2 148 70.3
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 5.7e-56 221.1 145 69.0
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 2.2e-55 219.2 142 69.7
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.9e-55 218.8 144 70.1
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 6.4e-55 217.6 142 72.5
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 6.4e-55 217.6 141 70.9
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 6.4e-55 217.6 147 68.7
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.1e-54 216.9 147 67.3
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 1.4e-54 216.5 141 70.9
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.8e-54 216.1 134 71.6
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.4e-54 215.7 137 73.0
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 4.1e-54 214.9 135 68.1
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 5.4e-54 214.5 134 72.4
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.6e-53 213.0 141 68.1
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.7e-53 212.2 131 74.8
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.7e-53 212.2 141 68.1
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 2.7e-53 212.2 141 68.1
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 3.5e-53 211.8 148 67.6
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 4.6e-53 211.5 133 70.7
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 6.0e-53 211.1 137 70.8
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 6.0e-53 211.1 136 69.9
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.3e-52 209.9 141 67.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 2.3e-52 209.1 147 64.6
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 2.3e-52 209.1 140 70.7
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 3.0e-52 208.8 133 74.4
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 3.9e-52 208.4 133 68.4
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 5.0e-52 208.0 141 68.1
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.1e-51 206.8 136 66.9
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.5e-51 206.5 142 67.6
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.9e-51 206.1 121 77.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 1.9e-51 206.1 141 66.7
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.5e-51 205.7 212 51.9
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.3e-51 205.3 129 73.6
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 3.3e-51 205.3 147 64.6
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.6e-51 204.5 129 72.1
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 7.3e-51 204.1 132 70.5
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 7.3e-51 204.1 129 72.1
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.2e-50 203.4 134 70.1
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.6e-50 203.0 134 70.1
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.8e-50 202.2 128 74.2
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.8e-50 202.2 128 74.2
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.8e-50 202.2 128 74.2
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.8e-50 202.2 129 71.3
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.8e-50 202.2 144 65.3
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 3.6e-50 201.8 137 67.2
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 3.6e-50 201.8 136 68.4
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 4.7e-50 201.4 147 63.9
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 6.2e-50 201.1 134 67.2
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.1e-49 200.3 136 67.6
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.4e-49 199.9 154 61.7
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 6.8e-49 197.6 135 66.7
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 6.8e-49 197.6 135 66.7
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 8.9e-49 197.2 141 62.4
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 8.9e-49 197.2 130 69.2
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 8.9e-49 197.2 130 69.2
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 8.9e-49 197.2 130 69.2
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.5e-48 196.4 142 66.9
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.0e-48 196.1 143 57.3
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 9.8e-48 193.7 143 56.6
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.2e-47 192.6 132 65.2
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 3.7e-47 191.8 128 67.2
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 8.3e-47 190.7 145 60.0
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.9e-46 189.5 129 69.8
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 2.4e-46 189.1 141 62.4
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.6e-45 186.4 141 58.2
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 5.0e-44 181.4 141 60.3
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.3e-43 178.7 122 65.6
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.6e-40 169.1 213 43.7
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 4.4e-40 168.3 126 62.7
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 3.7e-39 165.2 113 65.5
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 4.1e-38 161.8 134 56.0
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-35 152.1 130 54.6
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.4e-33 146.7 134 47.0
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 5.2e-33 144.8 133 47.4
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 8.9e-33 144.1 136 45.6
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.2e-31 139.4 145 51.0
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 6.4e-31 137.9 80 77.5
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 2.4e-30 136.0 84 73.8
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-29 133.3 118 50.0
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.1e-29 132.9 144 41.7
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 2.7e-29 132.5 120 48.3
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.0e-28 130.6 120 47.5
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 6.6e-28 127.9 82 70.7
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.5e-27 126.7 97 60.8
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.3e-27 125.6 84 69.0
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-26 122.9 114 48.2
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 9.9e-24 114.0 95 50.5
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.7e-23 113.2 133 39.8
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 2.9e-23 112.5 180 35.6
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 4.9e-23 111.7 136 38.2
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.7e-21 105.9 145 37.2
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 8.7e-20 100.9 90 63.3
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 1.1e-17 94.0 146 30.8
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 2.4e-17 92.8 87 52.9
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.1e-17 92.4 60 68.3
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.0e-17 92.0 60 68.3
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 1.3e-15 87.0 132 31.1
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-13 80.1 72 50.0
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 7.4e-11 71.2 106 34.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 2.9e-07 59.3 38 65.8


User provided reference genes

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