Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 4.4e-118 427.9 212 100.0
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.1e-111 406.8 203 98.0
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 1.9e-108 396.0 203 95.6
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.9e-92 342.8 198 86.4
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 4.2e-92 341.7 208 80.3
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.8e-63 246.5 205 62.9
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 9.3e-60 234.2 206 59.2
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 1.6e-59 233.4 205 60.5
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 3.5e-59 232.3 213 58.2
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.1e-58 228.4 209 57.9
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.1e-58 228.4 203 62.1
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 2.8e-56 222.6 196 58.2
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.4e-55 220.3 171 63.7
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 6.9e-55 218.0 196 57.1
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 3.4e-54 215.7 169 65.1
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 5.0e-53 211.8 203 56.2
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 6.5e-53 211.5 200 56.5
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.4e-52 210.3 210 55.7
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 1.9e-52 209.9 198 54.0
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 9.4e-52 207.6 198 54.5
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 2.1e-51 206.5 199 53.3
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 2.7e-51 206.1 204 53.4
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 3.6e-51 205.7 205 51.7
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 4.6e-51 205.3 169 58.6
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 4.6e-51 205.3 198 54.5
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 4.6e-51 205.3 207 52.7
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 4.6e-51 205.3 204 53.4
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 7.9e-51 204.5 157 61.1
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 7.9e-51 204.5 202 53.0
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 1.4e-50 203.8 204 52.9
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.8e-50 203.4 165 61.2
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 8.8e-50 201.1 161 58.4
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 4.3e-49 198.7 198 52.0
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.7e-48 196.8 199 52.8
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 2.8e-48 196.1 202 51.5
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 3.7e-48 195.7 195 49.2
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 6.3e-48 194.9 158 58.2
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 8.2e-48 194.5 198 51.5
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.1e-47 194.1 157 58.6
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.8e-47 193.4 206 51.0
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 2.4e-47 193.0 196 51.0
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.6e-46 189.5 202 49.5
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 3.4e-46 189.1 200 49.0
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 3.4e-46 189.1 197 51.3
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 7.7e-46 188.0 207 48.8
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.0e-45 187.6 210 48.1
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 1.3e-45 187.2 208 50.0
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.7e-45 186.8 161 55.9
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 1.7e-45 186.8 165 54.5
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 2.2e-45 186.4 210 48.1
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 8.5e-45 184.5 192 48.4
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 8.5e-45 184.5 197 48.2
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.4e-44 183.7 197 48.2
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.9e-44 183.3 156 56.4
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 3.2e-44 182.6 195 48.7
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 4.2e-44 182.2 206 44.7
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 9.4e-44 181.0 168 52.4
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 9.4e-44 181.0 199 48.7
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.6e-43 180.3 176 49.4
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 2.1e-43 179.9 167 48.5
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 2.1e-43 179.9 164 51.2
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 2.1e-43 179.9 151 54.3
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 2.7e-43 179.5 156 55.8
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 6.1e-43 178.3 200 46.5
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 7.9e-43 177.9 156 53.8
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.0e-42 177.6 212 44.8
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.8e-42 176.8 156 53.8
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-42 176.4 153 52.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-42 176.4 153 52.9
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.3e-42 176.4 157 52.9
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 2.3e-42 176.4 156 53.8
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 3.0e-42 176.0 157 53.5
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 6.7e-42 174.9 156 56.4
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 6.7e-42 174.9 161 54.0
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 8.8e-42 174.5 157 52.9
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.5e-41 173.7 221 42.5
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 2.0e-41 173.3 157 51.6
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 2.6e-41 172.9 192 46.4
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 4.4e-41 172.2 153 51.0
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 4.4e-41 172.2 201 43.8
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 5.7e-41 171.8 197 47.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 7.4e-41 171.4 164 48.2
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 1.7e-40 170.2 161 50.3
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.7e-40 170.2 177 55.9
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 2.8e-40 169.5 161 50.9
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 2.8e-40 169.5 192 45.3
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 6.3e-40 168.3 192 44.8
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.4e-39 167.2 195 44.6
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 3.1e-39 166.0 195 44.1
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 4.1e-39 165.6 196 44.9
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.1e-36 157.5 211 46.0
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 4.2e-36 155.6 153 49.0
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.2e-36 155.6 169 52.1
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.4e-34 150.6 165 48.5
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.3e-34 149.8 211 43.6
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.5e-33 147.1 168 49.4
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 4.4e-33 145.6 89 79.8
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 2.2e-32 143.3 191 40.3
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 1.4e-31 140.6 205 41.5
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.2e-30 137.5 136 50.0
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.3e-29 134.0 152 44.1
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 2.2e-29 133.3 190 40.0
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.1e-28 131.0 153 43.8
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 2.6e-25 119.8 153 45.1
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 5.7e-25 118.6 119 48.7
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 2.8e-24 116.3 151 38.4
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 3.1e-23 112.8 153 41.2
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.9e-21 106.3 91 51.6
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 4.2e-20 102.4 201 36.8
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.8e-18 97.1 84 56.0
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 4.4e-17 92.4 89 51.7
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 9.8e-17 91.3 67 56.7
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 1.9e-12 77.0 157 33.1
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 3.3e-12 76.3 53 58.5
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.3e-12 76.3 53 58.5
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 7.3e-12 75.1 66 45.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 5.2e-10 68.9 49 57.1
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 6.8e-10 68.6 166 30.7
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 1.2e-09 67.8 45 75.6


User provided reference genes

Program Settings