Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 2.6e-160 568.9 347 100.0
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 3.2e-158 562.0 347 98.8
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 9.7e-147 523.9 345 93.3
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 1.5e-128 463.4 338 82.8
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 1.0e-111 407.5 299 86.3
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 4.7e-109 398.7 352 63.6
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 4.5e-96 355.5 329 66.3
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 5.9e-96 355.1 320 69.1
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.7e-95 353.6 327 69.1
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 2.5e-94 349.7 329 66.0
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 4.3e-94 349.0 344 65.4
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 7.3e-94 348.2 325 66.8
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 2.0e-91 340.1 344 64.2
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.2e-90 336.7 314 62.7
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 4.9e-90 335.5 325 67.4
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 6.4e-90 335.1 325 64.3
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 5.4e-89 332.0 326 63.5
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 2.7e-88 329.7 319 67.7
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 1.0e-87 327.8 321 61.4
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 3.0e-87 326.2 316 63.6
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 3.9e-87 325.9 316 63.6
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 5.0e-87 325.5 319 65.5
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 6.6e-87 325.1 344 56.4
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 1.5e-86 323.9 334 64.1
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 1.5e-86 323.9 327 63.6
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 2.5e-86 323.2 337 63.8
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 2.5e-86 323.2 334 65.3
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 7.3e-86 321.6 327 64.5
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 9.5e-86 321.2 327 62.7
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 1.6e-85 320.5 368 54.6
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 2.8e-85 319.7 316 68.7
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 8.0e-85 318.2 323 63.2
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 2.3e-84 316.6 327 62.1
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 3.1e-84 316.2 327 66.1
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 3.1e-84 316.2 310 66.8
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 3.4e-83 312.8 315 64.8
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 5.8e-83 312.0 325 61.8
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 7.5e-83 311.6 320 64.7
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 9.8e-83 311.2 318 64.8
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 1.3e-82 310.8 325 64.3
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 1.7e-82 310.5 320 67.5
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 2.9e-82 309.7 339 55.2
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 3.7e-82 309.3 324 57.1
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 3.7e-82 309.3 315 65.4
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 6.4e-82 308.5 331 62.2
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 8.3e-82 308.1 329 62.0
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 8.3e-82 308.1 310 64.2
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.9e-81 307.0 320 64.1
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 5.4e-81 305.4 325 64.9
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 1.6e-80 303.9 331 61.3
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 6.0e-80 302.0 314 61.5
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 1.3e-79 300.8 335 57.3
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 1.3e-79 300.8 332 58.4
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 1.7e-79 300.4 334 59.6
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.7e-79 300.4 319 64.9
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 2.3e-79 300.1 334 60.8
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 3.9e-79 299.3 334 47.9
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 8.6e-79 298.1 332 57.5
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 1.1e-78 297.7 318 60.7
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 1.5e-78 297.4 327 63.6
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 1.5e-78 297.4 319 63.0
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 5.6e-78 295.4 315 54.6
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 9.5e-78 294.7 184 78.3
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 3.6e-77 292.7 354 52.3
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 3.6e-77 292.7 315 62.2
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 4.7e-77 292.4 317 63.7
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 4.7e-77 292.4 316 62.7
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 6.2e-77 292.0 317 62.1
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 2.3e-76 290.0 316 58.5
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 3.1e-76 289.7 327 63.3
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 4.0e-76 289.3 316 63.3
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 4.0e-76 289.3 316 63.3
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 5.2e-76 288.9 327 62.1
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 2.6e-75 286.6 319 60.5
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 5.8e-75 285.4 318 60.1
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 1.3e-74 284.3 323 58.5
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 1.7e-74 283.9 327 59.3
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 2.2e-74 283.5 316 62.0
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 3.7e-74 282.7 321 60.4
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 3.7e-74 282.7 321 57.9
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 1.9e-73 280.4 319 59.2
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 2.4e-73 280.0 321 58.6
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 9.2e-73 278.1 323 58.8
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 1.3e-71 274.2 310 58.4
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.3e-71 273.5 316 58.5
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 3.9e-71 272.7 316 58.9
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.5e-70 270.8 316 59.5
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 1.6e-69 267.3 327 52.6
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 2.8e-69 266.5 321 58.3
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 3.6e-69 266.2 323 56.3
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 1.4e-68 264.2 321 61.7
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 1.4e-68 264.2 321 61.7
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 2.4e-68 263.5 315 58.7
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 8.9e-68 261.5 325 60.3
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 2.4e-65 253.4 290 61.7
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 2.3e-63 246.9 327 54.4
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 3.3e-62 243.0 317 53.6
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 2.4e-60 236.9 316 57.3
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 4.0e-52 209.5 318 47.5
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 2.0e-51 207.2 182 58.8
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 4.9e-50 202.6 165 61.8
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 4.2e-49 199.5 162 58.6
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 2.1e-48 197.2 202 52.5
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 2.1e-45 187.2 250 43.2
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 4.6e-40 169.5 165 50.3
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 7.9e-40 168.7 163 52.1
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.3e-39 167.2 170 50.0
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.5e-38 163.7 158 52.5
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 8.2e-37 158.7 165 56.4
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.8e-36 157.5 165 49.7
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 1.5e-35 154.5 169 48.5
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 2.6e-35 153.7 214 62.1
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 1.3e-31 141.4 335 40.9
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 3.9e-31 139.8 167 51.5
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 6.9e-28 129.0 166 44.0
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 6.5e-26 122.5 101 58.4
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 1.6e-24 117.9 80 68.8
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 1.6e-24 117.9 100 58.0
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 2.1e-24 117.5 170 44.7
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 2.7e-24 117.1 247 29.6
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 4.6e-24 116.3 82 68.3
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 4.1e-20 103.2 72 68.1
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.1e-17 95.1 347 29.1
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 9.4e-17 92.0 65 67.7
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 9.4e-17 92.0 233 45.1
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 2.7e-16 90.5 65 67.7
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.9e-09 67.8 54 63.0
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 4.2e-09 66.6 122 33.6


User provided reference genes

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