Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 8.7e-243 843.2 420 100.0
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 1.5e-223 779.2 420 94.0
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 2.4e-208 728.8 416 89.4
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.6e-199 699.5 416 85.1
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.0e-183 646.0 416 78.8
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 8.3e-177 624.0 476 69.7
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.8e-171 606.3 512 64.6
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 9.9e-138 494.2 421 59.6
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.2e-136 489.2 417 60.2
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 4.2e-136 488.8 413 61.7
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 9.3e-136 487.6 409 63.3
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 6.0e-135 485.0 379 64.6
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 7.9e-135 484.6 379 64.4
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 5.6e-133 478.4 409 58.7
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.2e-130 470.7 397 59.9
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 3.4e-130 469.2 408 58.6
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.3e-129 467.2 406 57.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 2.4e-128 463.0 402 57.5
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 5.1e-126 455.3 406 56.7
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 5.1e-126 455.3 420 55.0
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.9e-125 453.4 408 56.6
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.1e-123 447.6 402 55.2
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 9.0e-123 444.5 411 55.7
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.0e-122 443.4 421 56.1
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 4.5e-122 442.2 422 54.0
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.0e-121 441.0 404 55.7
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 2.5e-120 436.4 409 56.0
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.6e-119 433.7 406 55.9
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 2.1e-119 433.3 351 60.4
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 3.5e-119 432.6 410 55.6
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.7e-116 422.5 412 54.6
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 8.2e-116 421.4 406 54.9
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 9.0e-115 417.9 410 55.1
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.0e-113 414.5 415 53.7
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.2e-113 413.3 404 54.0
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.1e-112 411.0 404 54.7
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.9e-112 410.2 431 49.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.5e-112 409.8 403 50.1
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 4.2e-112 409.1 404 54.7
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 8.8e-110 401.4 402 52.0
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.5e-109 399.8 481 47.2
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 5.7e-109 398.7 403 49.9
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 7.4e-109 398.3 419 50.1
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 5.0e-105 385.6 399 52.6
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 6.5e-105 385.2 411 49.9
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.4e-104 384.0 413 51.3
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 5.5e-104 382.1 414 48.3
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.2e-103 380.9 409 48.9
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.2e-103 380.9 414 50.2
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.6e-103 379.4 403 49.9
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.4e-102 377.5 415 47.7
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.3e-102 376.7 403 52.1
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 5.1e-102 375.6 408 48.3
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 2.6e-101 373.2 505 43.4
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 5.7e-101 372.1 388 51.5
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 5.7e-101 372.1 437 47.6
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 1.7e-100 370.5 432 49.1
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.1e-96 357.8 383 48.8
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 7.2e-96 355.1 385 47.5
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 7.2e-96 355.1 404 45.5
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 4.7e-95 352.4 383 48.6
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.4e-94 350.9 311 60.8
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 5.2e-94 349.0 385 49.1
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 5.2e-94 349.0 385 49.1
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 2.0e-93 347.1 315 60.3
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.4e-93 345.1 320 56.2
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 9.7e-93 344.7 385 48.6
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.8e-92 343.2 440 45.0
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.5e-88 330.1 249 65.9
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 7.2e-88 328.6 414 45.7
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.4e-86 324.3 393 46.6
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 2.3e-86 323.6 414 45.7
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.7e-84 316.2 419 44.4
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 8.5e-81 305.1 400 40.5
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 2.5e-80 303.5 314 53.8
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 7.2e-80 302.0 312 50.3
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.2e-79 301.2 420 41.4
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.4e-78 297.7 310 52.3
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.8e-78 297.4 339 50.7
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 6.8e-78 295.4 453 39.5
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.2e-76 290.4 233 64.4
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 3.7e-76 289.7 315 52.7
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 5.4e-75 285.8 285 53.3
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 5.7e-69 265.8 392 41.1
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.1e-67 259.6 249 57.0
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.9e-66 255.8 308 42.2
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 5.0e-65 252.7 290 49.3
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 5.0e-65 252.7 235 55.3
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 4.3e-64 249.6 301 47.2
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.6e-63 247.7 257 51.8
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.6e-63 246.5 257 51.4
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 6.1e-63 245.7 285 47.0
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.3e-62 243.8 257 52.1
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 6.4e-60 235.7 308 46.8
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 3.2e-59 233.4 253 53.0
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.6e-58 229.6 253 52.6
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.3e-57 228.0 309 40.8
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 2.3e-57 227.3 224 54.9
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.1e-56 224.9 237 51.5
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.9e-56 224.2 251 51.4
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 3.3e-56 223.4 285 46.0
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.1e-55 220.7 215 53.0
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.1e-55 220.7 240 50.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 6.2e-55 219.2 258 49.2
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.8e-54 217.6 240 50.0
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.2e-53 214.9 253 49.4
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.2e-53 214.9 240 49.6
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 2.0e-53 214.2 255 48.6
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 2.6e-53 213.8 213 53.5
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.4e-53 213.4 251 49.8
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 8.3e-52 208.8 293 45.7
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.9e-51 207.6 293 45.7
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.4e-51 207.2 290 44.8
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.4e-51 207.2 249 49.4
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.1e-50 204.1 284 43.7
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 2.1e-50 204.1 315 40.6
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 4.6e-50 203.0 207 53.1
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 7.8e-50 202.2 293 45.1
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.3e-49 201.4 287 46.3
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.7e-49 201.1 198 54.0
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 2.3e-49 200.7 293 44.7
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.1e-49 199.5 249 46.6
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 5.1e-49 199.5 241 47.7
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.1e-48 198.4 249 48.6
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 5.6e-48 196.1 249 48.2
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.1e-47 194.1 250 48.8
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.4e-43 181.4 312 35.6
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 5.1e-41 172.9 178 52.2
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 3.3e-40 170.2 265 41.5
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 2.8e-39 167.2 184 48.9
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 3.6e-39 166.8 284 36.6
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.0e-38 163.3 147 59.2
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 5.4e-35 152.9 213 40.4
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 7.1e-35 152.5 149 57.7
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.6e-34 149.8 170 50.0
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 6.0e-34 149.4 216 41.2
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 1.2e-29 135.2 72 81.9
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.1e-27 128.6 258 33.7
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 3.9e-25 120.2 198 40.9
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.9e-24 117.9 64 76.6
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.0e-21 107.8 130 46.2
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 2.4e-19 100.9 68 72.1
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 1.8e-14 84.7 137 37.2
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 2.2e-12 77.8 176 34.7
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-11 75.5 109 38.5
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.4e-11 75.1 56 73.2
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 4.2e-11 73.6 323 23.8
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 6.0e-10 69.7 81 46.9
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 8.7e-09 65.9 133 36.1
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-08 65.5 77 46.8
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 3.3e-08 63.9 77 46.8


User provided reference genes

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