Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 4.1e-256 887.5 424 100.0
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.3e-249 865.9 421 97.9
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 3.7e-241 837.8 421 95.5
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 6.2e-196 687.6 418 79.7
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 7.5e-194 680.6 459 73.4
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 8.7e-182 640.6 359 85.8
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.0e-174 617.1 363 81.5
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 5.7e-141 505.0 439 57.4
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 3.4e-138 495.7 444 57.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 8.2e-132 474.6 446 55.2
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.8e-131 473.4 460 54.6
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 8.5e-129 464.5 426 57.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 7.2e-128 461.5 456 54.8
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 8.0e-127 458.0 453 52.3
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 2.3e-126 456.4 420 56.0
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.8e-123 446.8 418 54.5
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 5.3e-123 445.3 420 55.2
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 7.0e-123 444.9 454 51.1
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 9.1e-123 444.5 464 51.1
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.6e-122 443.7 437 52.9
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 8.5e-121 438.0 444 52.5
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.5e-120 437.2 459 50.3
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.5e-120 437.2 373 60.1
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 1.9e-120 436.8 422 52.6
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 5.5e-120 435.3 460 51.3
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 2.1e-119 433.3 458 51.5
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.7e-119 433.0 459 50.1
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.6e-119 432.6 459 50.8
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 1.8e-118 430.3 472 50.2
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 2.3e-118 429.9 444 51.6
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 6.7e-118 428.3 421 52.3
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 8.8e-118 427.9 422 51.9
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 8.8e-118 427.9 455 48.8
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.0e-117 426.8 463 49.7
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 3.3e-117 426.0 457 50.3
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 3.3e-117 426.0 461 49.7
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 5.7e-117 425.2 454 50.0
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.7e-117 425.2 461 49.5
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 5.7e-117 425.2 493 49.1
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 7.5e-117 424.9 416 51.9
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.3e-116 424.1 444 52.5
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.8e-116 422.2 453 49.9
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 6.3e-116 421.8 419 51.6
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.1e-115 421.0 455 49.0
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 2.4e-115 419.9 451 48.6
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 4.1e-115 419.1 469 48.8
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.3e-113 414.1 430 50.9
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.2e-113 413.3 418 51.2
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 6.5e-113 411.8 425 50.6
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 6.5e-113 411.8 460 49.3
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 6.5e-113 411.8 460 49.3
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 1.2e-111 407.5 469 48.2
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 1.4e-110 404.1 419 50.8
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 2.3e-110 403.3 430 50.9
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.5e-109 400.6 435 50.6
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 2.2e-108 396.7 418 50.5
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.2e-108 396.7 455 45.9
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 2.2e-108 396.7 417 49.4
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.8e-108 396.4 453 47.5
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.8e-108 396.4 461 46.2
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 6.3e-108 395.2 455 45.7
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.8e-107 393.7 454 47.1
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.4e-107 393.3 468 45.5
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 3.1e-107 392.9 453 45.9
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 7.0e-107 391.7 418 48.8
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 7.0e-107 391.7 453 45.7
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.6e-106 390.6 435 48.3
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.6e-106 390.6 435 48.3
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 2.0e-106 390.2 415 50.1
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 1.3e-105 387.5 426 48.4
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 8.6e-105 384.8 385 52.5
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.5e-104 384.0 429 49.2
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 3.3e-104 382.9 437 49.9
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 7.2e-104 381.7 420 48.3
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 7.2e-104 381.7 435 47.4
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.4e-102 377.5 343 54.2
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 3.0e-102 376.3 308 57.5
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 4.4e-101 372.5 428 47.2
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 5.7e-101 372.1 330 55.2
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.4e-99 367.5 330 54.2
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 5.4e-99 365.5 428 44.6
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 2.7e-98 363.2 428 47.2
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 4.5e-98 362.5 352 54.3
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.3e-97 360.9 425 45.4
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 2.9e-97 359.8 417 47.0
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 8.9e-94 348.2 483 41.8
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 3.7e-92 342.8 424 44.8
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 7.0e-91 338.6 420 44.8
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.2e-90 337.8 428 44.4
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.2e-90 337.8 432 43.5
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 2.0e-90 337.0 420 46.4
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.3e-89 334.3 423 45.4
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.1e-88 331.3 429 43.8
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 9.5e-88 328.2 420 44.8
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 6.2e-87 325.5 425 44.2
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-86 324.3 298 53.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 5.2e-86 322.4 407 44.5
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.7e-82 310.1 437 44.4
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.6e-82 309.3 399 42.4
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.5e-80 303.5 518 37.5
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.9e-76 290.0 547 33.6
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 2.1e-74 283.9 420 41.7
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.5e-74 283.1 426 39.9
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.0e-73 281.6 338 46.4
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.6e-71 273.1 434 38.2
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 4.4e-69 266.2 298 49.3
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.4e-67 261.2 323 44.6
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 7.8e-66 255.4 339 44.8
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-61 241.1 407 36.1
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.4e-61 240.0 425 32.7
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.9e-59 234.2 267 49.4
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 1.3e-55 221.5 323 41.5
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 4.8e-55 219.5 492 31.5
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 6.2e-55 219.2 584 28.8
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.0e-49 201.8 308 39.9
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 8.1e-47 192.2 244 41.8
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.3e-44 184.9 141 63.8
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 3.8e-44 183.3 373 36.7
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 7.4e-40 169.1 160 48.8
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 9.6e-40 168.7 178 51.7
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-39 167.5 149 51.7
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.4e-38 164.1 164 49.4
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.1e-38 163.7 157 50.3
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 6.9e-38 162.5 139 53.2
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 7.4e-32 142.5 181 41.4
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.2e-29 135.2 265 32.5
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 2.5e-27 127.5 82 69.5
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.4e-25 121.7 94 61.7
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.5e-24 117.5 157 39.5
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.6e-18 98.2 154 40.9
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.9e-11 74.7 57 57.9
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 5.5e-11 73.2 71 53.5
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.2e-10 72.0 52 57.7
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 4.7e-10 70.1 36 86.1


User provided reference genes

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