Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 9.6e-65 250.0 124 100.0
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 5.8e-62 240.7 127 94.5
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.3e-58 228.8 128 92.2
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.2e-37 159.1 123 69.1
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-30 136.7 122 63.9
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.6e-30 136.3 125 60.0
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.5e-30 134.8 122 64.8
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-29 133.3 124 59.7
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.9e-29 132.1 126 61.9
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.8e-29 131.7 126 61.9
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.0e-29 131.3 124 60.5
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.1e-28 130.2 126 61.1
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.5e-28 129.0 128 59.4
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 9.4e-28 127.1 130 57.7
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.6e-27 126.3 133 54.9
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.0e-26 123.6 129 57.4
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.0e-26 123.6 130 56.9
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.4e-26 123.2 129 58.1
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.8e-26 122.9 127 56.7
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 4.0e-26 121.7 122 56.6
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-25 120.2 128 53.9
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-25 120.2 129 54.3
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.8e-24 115.5 125 55.2
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.3e-24 114.4 126 54.0
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-23 113.6 124 56.5
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.8e-23 112.8 129 52.7
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.1e-23 112.1 128 53.1
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.1e-23 112.1 129 54.3
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 5.3e-23 111.3 130 52.3
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.0e-22 109.4 132 49.2
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.7e-22 109.0 124 54.8
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.7e-22 109.0 127 55.1
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.5e-22 108.6 131 46.6
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.5e-22 108.2 124 50.0
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.0e-21 107.1 124 52.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.3e-21 106.7 126 51.6
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 3.8e-21 105.1 128 51.6
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 8.5e-21 104.0 124 46.8
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 3.2e-20 102.1 127 50.4
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.2e-20 102.1 131 45.8
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 4.2e-20 101.7 136 47.1
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 5.5e-20 101.3 127 49.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 7.2e-20 100.9 128 50.8
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 9.4e-20 100.5 124 46.8
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.6e-19 99.8 131 49.6
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.6e-19 99.8 134 46.3
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.6e-19 99.8 130 50.8
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.6e-19 99.8 127 52.8
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.1e-19 99.4 131 46.6
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 2.7e-19 99.0 122 49.2
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 8.0e-19 97.4 134 49.3
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.0e-18 97.1 130 48.5
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.4e-18 96.7 129 50.4
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 2.3e-18 95.9 124 46.0
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.0e-18 95.5 121 48.8
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 4.0e-18 95.1 129 45.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 6.8e-18 94.4 131 49.6
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 8.8e-18 94.0 131 45.0
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.2e-17 93.6 130 46.2
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.5e-17 93.2 131 48.1
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.5e-17 93.2 123 48.0
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 2.6e-17 92.4 131 48.1
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 3.4e-17 92.0 129 47.3
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.4e-17 91.7 134 46.3
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.4e-17 91.7 83 60.2
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 4.4e-17 91.7 81 59.3
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 5.7e-17 91.3 125 51.2
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.8e-17 90.5 129 46.5
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 9.8e-17 90.5 114 48.2
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.3e-16 90.1 83 59.0
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.2e-16 89.4 129 45.0
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.2e-16 89.4 128 44.5
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.2e-16 89.4 128 44.5
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 2.8e-16 89.0 125 45.6
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.7e-16 88.6 106 50.0
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.8e-16 88.2 123 41.5
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 6.3e-16 87.8 90 55.6
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 6.3e-16 87.8 90 55.6
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.3e-16 87.8 129 43.4
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.3e-16 87.8 128 43.8
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.1e-15 87.0 90 53.3
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.1e-15 87.0 128 43.8
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.4e-15 86.7 117 47.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.8e-15 86.3 131 42.7
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.8e-15 86.3 88 58.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 3.1e-15 85.5 129 39.5
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 4.1e-15 85.1 122 45.9
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.1e-15 85.1 131 42.7
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 4.1e-15 85.1 137 42.3
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 5.4e-15 84.7 131 43.5
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 5.4e-15 84.7 129 44.2
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 7.0e-15 84.3 127 42.5
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 119 46.2
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 119 46.2
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 119 46.2
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 119 46.2
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.2e-14 83.6 127 43.3
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.2e-14 83.6 129 41.1
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.6e-14 83.2 134 46.3
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.6e-14 83.2 134 45.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.0e-14 82.8 132 41.7
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 2.0e-14 82.8 131 42.7
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.0e-14 82.8 127 44.1
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.5e-14 82.0 130 42.3
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.5e-14 81.6 122 42.6
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.5e-14 81.6 130 43.8
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.5e-14 81.6 137 41.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 7.7e-14 80.9 124 45.2
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 7.7e-14 80.9 130 41.5
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.0e-13 80.5 124 45.2
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.3e-13 80.1 119 44.5
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.7e-13 79.7 130 43.1
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 2.9e-13 79.0 83 49.4
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.9e-13 79.0 122 42.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.9e-13 79.0 131 43.5
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.8e-13 78.6 122 39.3
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 5.0e-13 78.2 134 43.3
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 5.0e-13 78.2 132 40.9
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 8.5e-13 77.4 122 40.2
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 8.5e-13 77.4 130 41.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.1e-12 77.0 115 45.2
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.1e-12 77.0 83 53.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.1e-12 77.0 126 45.2
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 2.5e-12 75.9 124 44.4
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 2.5e-12 75.9 124 44.4
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.5e-12 75.9 91 50.5
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 5.5e-12 74.7 94 44.7
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 7.2e-12 74.3 113 41.6
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 7.2e-12 74.3 80 52.5
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 9.4e-12 73.9 131 38.9
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 9.4e-12 73.9 118 42.4
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.6e-11 73.2 130 39.2
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.6e-11 73.2 119 42.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.1e-11 72.8 115 46.1
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.1e-11 72.8 121 39.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.7e-11 72.4 117 41.0
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.7e-11 72.4 95 48.4
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.7e-11 72.4 113 38.9
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 4.7e-11 71.6 91 47.3
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 6.1e-11 71.2 114 43.0
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 6.1e-11 71.2 111 44.1
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 6.1e-11 71.2 127 39.4
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 8.0e-11 70.9 123 41.5
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.0e-10 70.5 114 43.0
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.8e-10 69.7 94 45.7
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.3e-10 69.3 104 44.2
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 3.0e-10 68.9 122 40.2
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 3.0e-10 68.9 96 42.7
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 3.0e-10 68.9 122 40.2
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.0e-10 68.6 124 39.5
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 5.2e-10 68.2 98 43.9
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 5.2e-10 68.2 84 47.6
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 6.8e-10 67.8 115 43.5
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 6.8e-10 67.8 123 39.0
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 8.8e-10 67.4 123 39.8
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-09 67.0 93 44.1
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.2e-09 67.0 93 44.1
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.6e-09 65.9 123 41.5
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.6e-09 65.9 116 45.7
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.6e-09 65.9 125 40.0
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 3.4e-09 65.5 97 42.3
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 4.4e-09 65.1 126 42.1
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.4e-09 65.1 82 45.1
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 9.8e-09 63.9 123 37.4
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 9.8e-09 63.9 123 37.4
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.3e-08 63.5 131 36.6
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.2e-08 62.8 123 38.2
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 2.2e-08 62.8 102 41.2
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.3e-08 61.2 72 45.8
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 128 36.7
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.4e-07 59.3 119 36.1
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.4e-07 59.3 100 39.0
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.6e-06 56.6 83 39.8
ECA232G3842 Erigeron canadensis HOM05D003592 ORTHO05D029303 1.6e-06 56.6 100 35.0
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 1.6e-06 56.6 95 35.8
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.6e-06 56.6 104 39.4
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.5e-06 55.5 86 36.0
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.5e-06 55.1 93 40.9
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.5e-06 55.1 120 39.2
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 5.9e-06 54.7 82 37.8


User provided reference genes

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