Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g072170.2 Solanum lycopersicum HOM05D006168 ORTHO05D007602 2.4e-70 268.9 150 100.0
Sopen06g028470 Solanum pennellii HOM05D006168 ORTHO05D007602 2.4e-70 268.9 150 100.0
PGSC0003DMG400027059 Solanum tuberosum HOM05D006168 ORTHO05D007602 2.7e-69 265.4 150 98.0
Peaxi162Scf00643g00537 Petunia axillaris HOM05D006168 ORTHO05D007602 1.2e-56 223.4 150 83.3
ECA238G2000 Erigeron canadensis HOM05D006168 ORTHO05D007602 4.6e-45 184.9 157 64.3
HanXRQChr14g0428251 Helianthus annuus HOM05D006168 ORTHO05D007602 3.9e-44 181.8 148 68.2
Dinv03501 Davidia involucrata HOM05D006168 ORTHO05D007602 5.1e-44 181.4 155 67.1
Dinv03506 Davidia involucrata HOM05D006168 ORTHO05D007602 5.1e-44 181.4 155 67.1
Atru.chr9.17 Acer truncatum HOM05D006168 ORTHO05D007602 6.6e-44 181.0 139 71.9
Lsat_1_v5_gn_2_6441 Lactuca sativa HOM05D006168 ORTHO05D007602 1.1e-43 180.3 152 63.8
Sabra04G0045100 Salix brachista HOM05D006168 ORTHO05D007602 3.3e-43 178.7 154 64.3
ECA238G2968 Erigeron canadensis HOM05D000092 ORTHO05D000042 5.6e-43 177.9 137 68.6
Duzib114G0883 Durio zibethinus HOM05D006168 ORTHO05D007602 7.3e-43 177.6 154 63.6
Gohir.D05G295400 Gossypium hirsutum HOM05D006168 ORTHO05D007602 7.3e-43 177.6 154 63.6
Duzib128G1786 Durio zibethinus HOM05D006168 ORTHO05D007602 9.6e-43 177.2 136 69.9
CAN.G65.65 Capsicum annuum HOM05D006168 ORTHO05D007602 1.6e-42 176.4 101 88.1
ECA238G0114 Erigeron canadensis HOM05D006168 ORTHO05D007602 1.6e-42 176.4 138 67.4
ECA238G1897 Erigeron canadensis HOM05D006168 ORTHO05D007602 1.6e-42 176.4 138 67.4
Potri.004G067300 Populus trichocarpa HOM05D006168 ORTHO05D007602 1.6e-42 176.4 154 63.6
GSVIVG01024249001 Vitis vinifera HOM05D006168 ORTHO05D007602 1.6e-42 176.4 143 67.1
Thecc.10G078900 Theobroma cacao HOM05D006168 ORTHO05D007602 2.1e-42 176.0 145 66.9
Gohir.A05G294800 Gossypium hirsutum HOM05D006168 ORTHO05D007602 3.6e-42 175.3 154 63.0
Gorai.009G312100 Gossypium raimondii HOM05D006168 ORTHO05D007602 6.2e-42 174.5 134 69.4
CANSAT35G1332 Cannabis sativa HOM05D006168 ORTHO05D007602 8.1e-42 174.1 145 63.4
Nn3g18550 Nelumbo nucifera HOM05D006168 ORTHO05D007602 8.1e-42 174.1 154 61.7
COL.COLO4_12167 Corchorus olitorius HOM05D006168 ORTHO05D007602 1.1e-41 173.7 145 66.2
Ah.14g084700 Amaranthus hybridus HOM05D006168 ORTHO05D007602 1.4e-41 173.3 139 70.5
DCAR_011406 Daucus carota HOM05D006168 ORTHO05D007602 2.4e-41 172.6 141 66.7
Manes.02G226600 Manihot esculenta HOM05D006168 ORTHO05D007602 2.4e-41 172.6 137 67.9
CDE04G1298 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 3.1e-41 172.2 150 66.7
Aqoxy2G03978 Aquilegia oxysepala HOM05D006168 ORTHO05D007602 5.3e-41 171.4 151 62.9
Rhsim12G0137000 Rhododendron simsii HOM05D006168 ORTHO05D007602 5.3e-41 171.4 130 69.2
CiPaw.16G075600 Carya illinoinensis HOM05D006168 ORTHO05D007602 1.2e-40 170.2 139 66.2
Prupe.5G244900 Prunus persica HOM05D006168 ORTHO05D007602 2.0e-40 169.5 149 61.1
Cc02_g29290 Coffea canephora HOM05D006168 ORTHO05D007602 3.4e-40 168.7 168 58.9
Migut.D02066 Erythranthe guttata HOM05D006168 ORTHO05D007602 3.4e-40 168.7 166 58.4
Hund08905 Selenicereus undatus HOM05D006168 ORTHO05D007602 5.8e-40 167.9 138 66.7
AUR62025335 Chenopodium quinoa HOM05D006168 ORTHO05D007602 9.9e-40 167.2 133 68.4
MSTRG.4316 Avicennia marina HOM05D006168 ORTHO05D007602 1.3e-39 166.8 162 60.5
EL10Ac8g18962 Beta vulgaris HOM05D006168 ORTHO05D007602 1.3e-39 166.8 152 63.8
MELO3C002180.2 Cucumis melo HOM05D006168 ORTHO05D007602 1.3e-39 166.8 153 60.1
CsaV3_1G007610 Cucumis sativus L. HOM05D006168 ORTHO05D007602 1.3e-39 166.8 153 60.8
ClCG01G014720 Citrullus lanatus HOM05D006168 ORTHO05D007602 1.7e-39 166.4 152 60.5
QL10p033704 Quercus lobata HOM05D006168 ORTHO05D007602 2.2e-39 166.0 132 70.5
Cfa017805 Carpinus fangiana HOM05D006168 ORTHO05D007602 6.4e-39 164.5 133 66.2
AUR62028326 Chenopodium quinoa HOM05D006168 ORTHO05D007602 8.4e-39 164.1 137 66.4
CDE08G0644 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 1.1e-38 163.7 152 64.5
Sed0019180 Sechium edule HOM05D006168 ORTHO05D007602 1.4e-38 163.3 153 61.4
MBI06_g12548_MAGBIO Magnolia biondii HOM05D006168 ORTHO05D007602 3.2e-38 162.2 148 64.2
PSO063G5228 Papaver somniferum HOM05D006168 ORTHO05D007602 7.1e-38 161.0 150 62.7
TWI81G0790 Tripterygium wilfordii HOM05D006168 ORTHO05D007602 1.2e-37 160.2 153 62.7
Eucgr.H00657 Eucalyptus grandis HOM05D006168 ORTHO05D007602 1.6e-37 159.8 140 65.0
SGA_v2.0_scaffold387G50509 Striga asiatica HOM05D006168 ORTHO05D007602 2.1e-37 159.5 167 58.7
TAR629G1867 Trochodendron aralioides HOM05D006168 ORTHO05D007602 2.7e-37 159.1 136 65.4
RcHm_v2.0_Chr7g0176961 Rosa chinensis HOM05D006168 ORTHO05D007602 6.0e-37 157.9 159 57.2
CSS0046866 Camellia sinensis var. sinensis HOM05D006168 ORTHO05D007602 1.3e-36 156.8 97 79.4
PGR083G1429 Punica granatum HOM05D006168 ORTHO05D007602 1.3e-36 156.8 155 60.0
BolC3t16418H Brassica oleracea HOM05D006168 ORTHO05D007602 3.0e-36 155.6 144 61.8
Lj5g0014337 Lotus japonicus HOM05D006168 ORTHO05D007602 3.9e-36 155.2 159 58.5
BraA03t12572Z Brassica rapa HOM05D006168 ORTHO05D007602 6.7e-36 154.5 144 60.4
vmacro16399 Vaccinium macrocarpon HOM05D006168 ORTHO05D007602 8.7e-36 154.1 163 55.8
FvH4_5g18550 Fragaria vesca HOM05D006168 ORTHO05D007602 5.6e-35 151.4 162 54.9
FAN18G0639 Fragaria x ananassa HOM05D006168 ORTHO05D007602 5.6e-35 151.4 162 54.9
ATR0124G011 Amborella trichopoda HOM05D006168 ORTHO05D007602 9.6e-35 150.6 136 61.8
FAN04G0186 Fragaria x ananassa HOM05D006168 ORTHO05D007602 9.6e-35 150.6 161 53.4
Glyma.10G174000 Glycine max HOM05D006168 ORTHO05D007602 9.6e-35 150.6 144 61.1
VMungo0720G1915 Vigna mungo HOM05D006168 ORTHO05D007602 9.6e-35 150.6 146 58.2
unitig_21.g20432 Utricularia gibba HOM05D006168 ORTHO05D007602 1.6e-34 149.8 161 57.1
Glyma.20G216400 Glycine max HOM05D006168 ORTHO05D007602 6.2e-34 147.9 150 58.7
MD06G1240400 Malus domestica HOM05D006168 ORTHO05D007602 1.1e-33 147.1 153 56.9
CARHR079400 Cardamine hirsuta HOM05D006168 ORTHO05D007602 2.4e-33 146.0 138 60.1
Thhalv10021722m.g Eutrema salsugineum HOM05D006168 ORTHO05D007602 2.4e-33 146.0 127 62.2
FAN08G3581 Fragaria x ananassa HOM05D006168 ORTHO05D007602 4.0e-33 145.2 161 52.2
Sp3g03900 Schrenkiella parvula HOM05D006168 ORTHO05D007602 4.0e-33 145.2 138 58.7
Medtr1g077570 Medicago truncatula HOM05D006168 ORTHO05D007602 5.3e-33 144.8 171 53.8
Aa31LG5G15370 Aethionema arabicum HOM05D006168 ORTHO05D007602 1.2e-32 143.7 140 58.6
SalBow8G4549 Salvia bowleyana HOM05D006168 ORTHO05D007602 1.2e-32 143.7 149 59.1
Phvul.L006301 Phaseolus vulgaris HOM05D006168 ORTHO05D007602 1.5e-32 143.3 146 57.5
Lalb_Chr21g0311691 Lupinus albus HOM05D006168 ORTHO05D007602 2.6e-32 142.5 145 57.9
Ciclev10022597m.g Citrus clementina HOM05D006168 ORTHO05D007602 3.4e-32 142.1 158 52.5
MD14G1246600 Malus domestica HOM05D006168 ORTHO05D007602 7.6e-32 141.0 152 53.9
HPP92_020852 Vanilla planifolia HOM05D006168 ORTHO05D007602 1.7e-31 139.8 135 61.5
Ca_09928_v3 Cicer arietinum L. HOM05D006168 ORTHO05D007602 4.9e-31 138.3 167 53.9
Psat6g054520 Pisum sativum HOM05D006168 ORTHO05D007602 5.5e-30 134.8 163 50.9
Nitab4.5_0000477g0160 Nicotiana tabacum HOM05D006168 ORTHO05D007602 1.2e-29 133.7 151 62.3
AL3G15460 Arabidopsis lyrata HOM05D006168 ORTHO05D007602 2.7e-29 132.5 138 55.8
C05p62160 Brassica napus HOM05D006168 ORTHO05D007602 3.5e-29 132.1 139 53.2
BolC5t34874H Brassica oleracea HOM05D006168 ORTHO05D007602 3.5e-29 132.1 139 53.2
Nitab4.5_0002771g0020 Nicotiana tabacum HOM05D006168 ORTHO05D007602 4.6e-29 131.7 131 62.6
THA.LOC104818656 Tarenaya hassleriana HOM05D006168 ORTHO05D007602 7.9e-29 131.0 144 54.9
Carub.0003s0432 Capsella rubella HOM05D006168 ORTHO05D007602 2.3e-28 129.4 138 55.8
Haze_18408 Corylus avellana HOM05D006168 ORTHO05D007602 3.0e-28 129.0 112 58.9
Oeu034422.1 Olea europaea HOM05D006168 ORTHO05D007602 3.0e-28 129.0 136 57.4
SEGI_05677 Sequoiadendron giganteum HOM05D006168 ORTHO05D007602 6.7e-28 127.9 153 49.0
AT3G05070 Arabidopsis thaliana HOM05D006168 ORTHO05D007602 1.1e-27 127.1 138 54.3
A05p42500 Brassica napus HOM05D006168 ORTHO05D007602 2.5e-27 125.9 139 51.1
BraA05t23002Z Brassica rapa HOM05D006168 ORTHO05D007602 2.5e-27 125.9 139 51.1
RcHm_v2.0_Chr5g0006211 Rosa chinensis HOM05D006168 ORTHO05D007602 1.6e-26 123.2 135 52.6
AagrBONN_evm.TU.Sc2ySwM_368.389 Anthoceros agrestis HOM05D006168 ORTHO05D007602 5.3e-25 118.2 136 50.7
BcaC05g29992 Brassica carinata HOM05D006168 ORTHO05D007602 2.6e-24 115.9 139 49.6
Os06g0730800 Oryza sativa ssp. japonica HOM05D006168 ORTHO05D007602 7.6e-24 114.4 162 46.9
Zm00001eb228960 Zea mays HOM05D006168 ORTHO05D007602 1.3e-23 113.6 172 44.2
Pp3c19_22150 Physcomitrium patens HOM05D006168 ORTHO05D007602 1.7e-23 113.2 131 50.4
arahy.Tifrunner.gnm1.ann1.52MA05 Arachis hypogaea HOM05D006168 ORTHO05D007602 1.9e-22 109.8 145 46.9
FvH4_3g03920 Fragaria vesca HOM05D006168 ORTHO05D007602 4.2e-22 108.6 139 48.9
FAN11G1802 Fragaria x ananassa HOM05D006168 ORTHO05D007602 5.5e-22 108.2 139 48.9
SMO147G0110 Selaginella moellendorffii HOM05D006168 ORTHO05D007602 7.1e-22 107.8 132 50.8
FAN16G2203 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.2e-21 107.1 139 48.9
Sed0015845 Sechium edule HOM05D006168 ORTHO05D007602 1.2e-21 107.1 143 49.0
FAN25G2877 Fragaria x ananassa HOM05D006168 ORTHO05D007602 2.1e-21 106.3 139 48.2
Mapoly0133s0024 Marchantia polymorpha HOM05D006168 ORTHO05D007602 2.7e-21 105.9 119 50.4
FAN21G2556 Fragaria x ananassa HOM05D006168 ORTHO05D007602 7.9e-21 104.4 139 47.5
BcaB04g19282 Brassica carinata HOM05D006168 ORTHO05D007602 3.9e-20 102.1 90 65.6
Sc15g0000010 Simmondsia chinensis HOM05D006168 ORTHO05D007602 8.7e-20 100.9 96 60.4
Potri.017G154100 Populus trichocarpa HOM05D006168 ORTHO05D007602 1.8e-17 93.2 99 52.5
BcaC01g04336 Brassica carinata HOM05D006168 ORTHO05D007602 9.0e-17 90.9 102 52.9
FAN13G0455 Fragaria x ananassa HOM05D006168 ORTHO05D007602 5.9e-16 88.2 102 49.0
CBR_g57849 Chara braunii HOM05D006168 ORTHO05D007602 6.5e-15 84.7 104 45.2
arahy.Tifrunner.gnm1.ann1.S1M3RU Arachis hypogaea HOM05D006168 ORTHO05D007602 8.5e-15 84.3 120 41.7
Cre12.g518300 Chlamydomonas reinhardtii HOM05D006168 ORTHO05D007602 1.4e-14 83.6 120 46.7
TPR.G8871 Trifolium pratense HOM05D006168 ORTHO05D007602 4.6e-13 78.6 56 73.2
TPR.G35595 Trifolium pratense HOM05D006168 ORTHO05D007602 5.7e-11 71.6 102 47.1
PGSC0003DMG400027602 Solanum tuberosum HOM05D000718 ORTHO05D002712 7.7e-08 61.2 58 63.8
MCO12G027 Micromonas commoda HOM05D006168 ORTHO05D007602 1.3e-07 60.5 132 37.1
A03p33970 Brassica napus HOM05D006168 ORTHO05D007602 5.5e-06 55.1 64 50.0


User provided reference genes

Program Settings