Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 5.2e-28 127.1 68 100.0
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 5.2e-28 127.1 68 100.0
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 1.5e-27 125.6 68 98.5
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 3.5e-24 114.4 68 92.6
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 6.3e-18 93.6 68 77.9
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 1.5e-14 82.4 68 72.1
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 3.2e-14 81.3 68 72.1
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 7.2e-14 80.1 65 66.2
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 9.4e-14 79.7 67 68.7
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 9.4e-14 79.7 73 65.8
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 3.6e-13 77.8 75 62.7
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 3.6e-13 77.8 75 62.7
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 3.6e-13 77.8 75 62.7
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 3.6e-13 77.8 68 70.6
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 4.7e-13 77.4 74 64.9
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 6.1e-13 77.0 69 71.0
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 8.0e-13 76.6 64 71.9
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 8.0e-13 76.6 68 61.8
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 1.0e-12 76.3 67 68.7
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 1.8e-12 75.5 68 60.3
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 4.0e-12 74.3 74 62.2
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 8.8e-12 73.2 72 65.3
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 1.2e-11 72.8 70 67.1
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 1.5e-11 72.4 58 77.6
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 3.4e-11 71.2 68 63.2
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 3.4e-11 71.2 66 65.2
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 3.4e-11 71.2 67 64.2
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 4.4e-11 70.9 67 64.2
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 7.5e-11 70.1 66 65.2
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 9.8e-11 69.7 66 63.6
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 1.3e-10 69.3 66 56.1
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.7e-10 68.9 65 64.6
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 1.7e-10 68.9 68 60.3
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 1.7e-10 68.9 67 62.7
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 1.7e-10 68.9 66 63.6
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.8e-10 68.2 70 64.3
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 6.3e-10 67.0 69 68.1
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 1.1e-09 66.2 79 55.7
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 1.4e-09 65.9 68 60.3
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 1.4e-09 65.9 45 75.6
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 2.4e-09 65.1 69 62.3
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 2.4e-09 65.1 67 62.7
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 3.1e-09 64.7 38 84.2
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 4.1e-09 64.3 68 60.3
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 7.0e-09 63.5 68 64.7
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 9.1e-09 63.2 44 79.5
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 9.1e-09 63.2 73 60.3
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 1.6e-08 62.4 69 52.2
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 2.0e-08 62.0 40 77.5
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 2.7e-08 61.6 40 80.0
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 2.7e-08 61.6 74 55.4
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 2.7e-08 61.6 63 61.9
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 2.7e-08 61.6 71 59.2
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 3.5e-08 61.2 63 61.9
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 5.9e-08 60.5 80 52.5
Nn4g22432 Nelumbo nucifera HOM05D007996 ORTHO05D009821 5.9e-08 60.5 65 56.9
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 5.9e-08 60.5 71 54.9
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 7.7e-08 60.1 64 60.9
PGSC0003DMG400015301 Solanum tuberosum HOM05D007996 ORTHO05D009821 7.7e-08 60.1 45 77.8
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 1.0e-07 59.7 75 53.3
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 1.3e-07 59.3 75 50.7
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 1.7e-07 58.9 63 58.7
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 2.3e-07 58.5 72 56.9
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 2.3e-07 58.5 66 54.5
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 2.3e-07 58.5 67 56.7
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 2.3e-07 58.5 66 54.5
AL8G24410 Arabidopsis lyrata HOM05D013032 ORTHO05D009821 2.9e-07 58.2 75 53.3
Thhalv10015187m.g Eutrema salsugineum HOM05D013032 ORTHO05D009821 2.9e-07 58.2 75 53.3
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 5.0e-07 57.4 76 51.3
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 5.0e-07 57.4 67 55.2
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 6.6e-07 57.0 75 50.7
Lsat_1_v5_gn_4_99100 Lactuca sativa HOM05D007996 ORTHO05D009821 8.6e-07 56.6 68 51.5
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 1.1e-06 56.2 75 53.3
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 1.1e-06 56.2 43 72.1
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 1.1e-06 56.2 69 53.6
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 1.1e-06 56.2 62 62.9
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 1.5e-06 55.8 73 49.3
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 1.9e-06 55.5 63 54.0
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 1.9e-06 55.5 52 61.5
TAR629G0997 Trochodendron aralioides HOM05D007996 ORTHO05D009821 2.5e-06 55.1 72 54.2
Lj1g0020512 Lotus japonicus HOM05D007996 ORTHO05D009821 9.5e-06 53.1 63 61.9


User provided reference genes

Program Settings