Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 0.0e+00 1284.2 658 100.0
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 0.0e+00 1256.9 658 98.0
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 0.0e+00 1251.1 658 96.7
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 0.0e+00 1110.1 645 88.7
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 0.0e+00 1109.7 642 88.3
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 0.0e+00 1087.4 621 89.2
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 9.4e-276 953.4 554 89.0
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 3.0e-258 895.2 638 72.3
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 5.5e-252 874.4 657 69.6
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 9.8e-249 863.6 570 75.8
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 8.3e-248 860.5 686 66.8
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 2.7e-246 855.5 654 69.1
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 6.5e-245 850.9 645 69.8
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 2.1e-243 845.9 576 72.4
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 3.4e-241 838.6 654 66.4
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 7.5e-241 837.4 622 69.3
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 1.4e-239 833.2 529 78.1
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 7.7e-238 827.4 564 73.8
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.1e-236 823.5 541 76.5
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 8.0e-235 817.4 609 69.1
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.8e-234 816.2 630 67.0
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 1.8e-234 816.2 660 64.7
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 6.8e-234 814.3 612 68.0
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 1.2e-233 813.5 655 65.5
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 1.2e-233 813.5 682 63.5
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.9e-232 808.9 657 65.1
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.4e-231 806.6 621 66.7
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 5.4e-231 804.7 632 65.8
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 9.2e-231 803.9 614 68.7
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.3e-229 800.0 660 65.5
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.9e-228 796.2 657 64.1
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.9e-228 796.2 610 66.9
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.9e-228 796.2 610 66.9
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 3.3e-228 795.4 652 64.6
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 4.3e-228 795.0 619 65.6
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 4.7e-227 791.6 618 66.2
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 8.9e-226 787.3 625 65.0
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 1.2e-225 786.9 625 65.0
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 9.8e-225 783.9 650 64.9
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 3.7e-224 781.9 618 66.2
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 4.9e-224 781.6 627 63.6
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 7.0e-223 777.7 620 64.5
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 3.5e-222 775.4 625 64.0
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.3e-221 773.5 616 66.4
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.5e-220 769.2 661 62.9
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 7.3e-220 767.7 661 63.2
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.1e-219 766.1 661 62.8
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 2.1e-219 766.1 621 65.2
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.7e-216 756.5 574 68.3
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 3.7e-216 755.4 622 64.6
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.9e-215 753.1 615 63.9
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.2e-214 750.4 615 63.1
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.6e-214 750.0 651 60.2
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.3e-213 746.9 620 64.0
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.3e-213 746.9 656 60.2
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 5.1e-213 745.0 619 61.9
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.9e-212 743.0 624 60.7
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 2.5e-212 742.7 628 61.3
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 2.1e-211 739.6 610 62.8
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 2.8e-211 739.2 619 63.0
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.3e-210 736.1 633 62.6
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 6.8e-210 734.6 606 64.9
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 4.4e-209 731.9 648 58.3
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 3.7e-208 728.8 622 60.6
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 7.1e-207 724.5 584 63.7
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.2e-206 723.8 650 58.9
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.2e-206 723.8 619 62.7
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 1.6e-206 723.4 623 61.2
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.6e-206 723.4 632 60.1
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 6.0e-206 721.5 644 59.8
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 5.6e-204 714.9 560 65.7
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 1.5e-201 706.8 659 58.1
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 6.0e-198 694.9 611 61.7
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 6.0e-198 694.9 652 57.7
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 2.5e-196 689.5 648 56.8
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.3e-195 687.2 647 57.7
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.5e-193 680.2 609 59.9
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 3.5e-190 669.1 517 64.0
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.7e-189 666.8 644 55.9
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.1e-188 664.1 644 55.7
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.6e-187 660.2 618 57.3
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 4.8e-187 658.7 626 57.5
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 7.1e-183 644.8 621 55.7
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 2.7e-182 642.9 621 55.2
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 6.0e-182 641.7 608 55.4
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.9e-180 636.7 455 71.2
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.5e-175 619.8 650 52.6
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 1.1e-172 610.9 502 62.9
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 6.1e-166 588.6 605 52.7
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 1.6e-163 580.5 616 53.2
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 8.2e-163 578.2 465 64.1
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.4e-159 567.4 462 63.9
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.2e-159 565.1 536 57.5
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.3e-147 527.7 629 48.2
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 2.2e-147 526.9 624 48.1
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 6.3e-147 525.4 611 48.6
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 2.6e-140 503.4 622 47.4
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 3.3e-140 503.1 314 79.9
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.1e-138 498.0 632 44.9
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.9e-137 492.3 428 61.0
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 1.2e-134 484.6 347 69.7
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.4e-133 481.1 358 68.2
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 7.7e-129 465.3 386 63.7
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-128 463.8 332 68.7
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 3.8e-128 463.0 500 53.0
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.4e-106 389.4 514 44.9
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 1.5e-84 318.2 323 56.0
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 4.9e-83 313.2 254 64.6
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-81 308.1 200 74.0
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-73 281.2 200 69.0
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.4e-71 272.7 194 67.5
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 8.1e-70 269.2 349 44.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 2.6e-68 264.2 286 54.5
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.2e-66 256.9 197 65.0
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.9e-63 248.1 200 66.0
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.4e-61 241.9 167 73.7
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.3e-56 225.3 174 66.1
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.1e-53 213.8 158 71.5
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 9.0e-53 212.6 158 71.5
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 4.8e-46 190.3 167 57.5
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-44 185.3 123 70.7
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 3.3e-39 167.5 153 57.5
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.6e-36 157.9 253 41.1
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 3.4e-36 157.5 307 38.4
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.1e-34 152.5 109 68.8
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 3.9e-32 144.1 169 52.1
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.4e-31 140.6 102 62.7
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-30 138.7 92 69.6
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-28 131.7 97 64.9
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.2e-27 128.3 71 85.9
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.9e-27 127.9 179 45.3
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.0e-25 119.8 80 72.5
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 1.5e-23 115.5 92 65.2
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-23 114.8 79 69.6
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 3.5e-20 104.4 89 64.0
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 5.0e-19 100.5 63 73.0
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.6e-17 95.5 82 54.9
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.5e-10 72.4 58 62.1
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.9e-10 72.0 46 67.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 7.2e-10 70.1 46 65.2
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 7.2e-10 70.1 46 65.2
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 9.5e-10 69.7 39 76.9
Nitab4.5_0001803g0120 Nicotiana tabacum HOM05D005920 ORTHO05D007211 4.4e-07 60.8 261 24.5
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 9.8e-07 59.7 112 33.9
AUR62014341 Chenopodium quinoa HOM05D005920 ORTHO05D007211 1.3e-06 59.3 124 33.1
Gohir.D05G237100 Gossypium hirsutum HOM05D005920 ORTHO05D007211 2.8e-06 58.2 124 31.5
EL10Ac1g01005 Beta vulgaris HOM05D005920 ORTHO05D007211 3.7e-06 57.8 124 33.1
AUR62019083 Chenopodium quinoa HOM05D005920 ORTHO05D007211 3.7e-06 57.8 124 32.3
Gohir.A05G234800 Gossypium hirsutum HOM05D005920 ORTHO05D007211 4.9e-06 57.4 107 33.6
Gorai.009G245500 Gossypium raimondii HOM05D005920 ORTHO05D007211 4.9e-06 57.4 107 33.6
Solyc11g012900.3 Solanum lycopersicum HOM05D005920 ORTHO05D007211 4.9e-06 57.4 130 30.8


User provided reference genes

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