Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071730.3 Solanum lycopersicum HOM05D002645 ORTHO05D002741 5.1e-57 224.2 111 100.0
Sopen06g028030 Solanum pennellii HOM05D002645 ORTHO05D002741 4.0e-30 134.8 98 71.4
PGSC0003DMG400026986 Solanum tuberosum HOM05D002645 ORTHO05D002741 7.6e-29 130.6 99 69.7
CAN.G993.22 Capsicum annuum HOM05D002645 ORTHO05D002741 2.8e-23 112.1 101 58.4
Sopen03g031430 Solanum pennellii HOM05D002645 ORTHO05D002741 8.4e-20 100.5 103 54.4
PGSC0003DMG400018183 Solanum tuberosum HOM05D002645 ORTHO05D002741 8.4e-20 100.5 103 54.4
CAN.G338.23 Capsicum annuum HOM05D002645 ORTHO05D002741 1.9e-19 99.4 103 54.4
Solyc03g112330.3 Solanum lycopersicum HOM05D002645 ORTHO05D002741 1.9e-19 99.4 103 53.4
Nitab4.5_0001793g0110 Nicotiana tabacum HOM05D002645 ORTHO05D002741 5.5e-19 97.8 94 56.4
Nitab4.5_0003703g0030 Nicotiana tabacum HOM05D002645 ORTHO05D002741 5.5e-19 97.8 94 58.5
Peaxi162Scf00089g01428 Petunia axillaris HOM05D002645 ORTHO05D002741 7.1e-19 97.4 98 55.1
CSS0025007 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 1.1e-16 90.1 103 51.5
Nitab4.5_0001683g0040 Nicotiana tabacum HOM05D002645 ORTHO05D002741 1.9e-16 89.4 99 49.5
Rhsim11G0055900 Rhododendron simsii HOM05D002645 ORTHO05D002741 2.5e-16 89.0 102 51.0
Potri.015G083100 Populus trichocarpa HOM05D002645 ORTHO05D002741 4.3e-16 88.2 100 51.0
vmacro19312 Vaccinium macrocarpon HOM05D002645 ORTHO05D002741 7.4e-16 87.4 68 70.6
Atru.chr9.2561 Acer truncatum HOM05D002645 ORTHO05D002741 9.7e-16 87.0 100 51.0
Nitab4.5_0000025g0300 Nicotiana tabacum HOM05D002645 ORTHO05D002741 2.8e-15 85.5 93 49.5
Sabra15G0106600 Salix brachista HOM05D000032 ORTHO05D002741 2.8e-15 85.5 99 50.5
Manes.14G061300 Manihot esculenta HOM05D002645 ORTHO05D002741 1.1e-14 83.6 102 48.0
Sabra12G0060900 Salix brachista HOM05D002645 ORTHO05D002741 1.1e-14 83.6 100 49.0
CiPaw.11G021400 Carya illinoinensis HOM05D002645 ORTHO05D002741 1.8e-14 82.8 101 48.5
Haze_07573 Corylus avellana HOM05D002645 ORTHO05D002741 1.8e-14 82.8 99 46.5
QL10p007255 Quercus lobata HOM05D002645 ORTHO05D002741 1.8e-14 82.8 100 50.0
Potri.012G084700 Populus trichocarpa HOM05D002645 ORTHO05D002741 2.4e-14 82.4 100 50.0
Sed0017809 Sechium edule HOM05D002645 ORTHO05D002741 4.1e-14 81.6 100 48.0
TPR.G37541 Trifolium pratense HOM05D002645 ORTHO05D002741 5.3e-14 81.3 101 45.5
Duzib068G1337 Durio zibethinus HOM05D002645 ORTHO05D002741 1.2e-13 80.1 100 49.0
Oeu027444.1 Olea europaea HOM05D002645 ORTHO05D002741 1.2e-13 80.1 76 60.5
Psat4g060400 Pisum sativum HOM05D002645 ORTHO05D002741 1.2e-13 80.1 101 46.5
Ca_14270_v3 Cicer arietinum L. HOM05D002645 ORTHO05D002741 2.0e-13 79.3 101 45.5
Ciclev10021791m.g Citrus clementina HOM05D002645 ORTHO05D002741 2.0e-13 79.3 102 45.1
Cc04_g11710 Coffea canephora HOM05D002645 ORTHO05D002741 2.0e-13 79.3 76 56.6
Dinv38539 Davidia involucrata HOM05D002645 ORTHO05D002741 2.0e-13 79.3 93 51.6
Medtr4g105090 Medicago truncatula HOM05D002645 ORTHO05D002741 2.0e-13 79.3 101 44.6
COL.COLO4_05567 Corchorus olitorius HOM05D002645 ORTHO05D002741 2.6e-13 79.0 100 47.0
Hma1.2p1_0046F.1_g027040 Hydrangea macrophylla HOM05D002645 ORTHO05D002741 3.4e-13 78.6 72 58.3
TAR374G0680 Trochodendron aralioides HOM05D002645 ORTHO05D002741 3.4e-13 78.6 67 64.2
MELO3C026262.2 Cucumis melo HOM05D002645 ORTHO05D002741 4.5e-13 78.2 100 45.0
CsaV3_1G001130 Cucumis sativus L. HOM05D002645 ORTHO05D002741 4.5e-13 78.2 100 45.0
DCAR_016457 Daucus carota HOM05D002645 ORTHO05D002741 4.5e-13 78.2 100 47.0
Thecc.03G020100 Theobroma cacao HOM05D002645 ORTHO05D002741 4.5e-13 78.2 67 61.2
MSTRG.11489 Avicennia marina HOM05D002645 ORTHO05D002741 7.6e-13 77.4 76 59.2
Glyma.17G085200 Glycine max HOM05D002645 ORTHO05D002741 7.6e-13 77.4 100 43.0
Lj4g0025839 Lotus japonicus HOM05D002645 ORTHO05D002741 7.6e-13 77.4 67 61.2
ClCG06G001960 Citrullus lanatus HOM05D002645 ORTHO05D002741 1.0e-12 77.0 100 44.0
CsaV3_6G008020 Cucumis sativus L. HOM05D002645 ORTHO05D002741 1.7e-12 76.3 100 44.0
Lj5A129T72 Lonicera japonica HOM05D002645 ORTHO05D002741 1.7e-12 76.3 100 48.0
Glyma.05G041100 Glycine max HOM05D002645 ORTHO05D002741 3.8e-12 75.1 100 42.0
Eucgr.K02804 Eucalyptus grandis HOM05D002645 ORTHO05D002741 6.5e-12 74.3 100 46.0
GSVIVG01007663001 Vitis vinifera HOM05D002645 ORTHO05D002741 6.5e-12 74.3 99 46.5
SGA_v2.0_scaffold90G27851 Striga asiatica HOM05D001863 ORTHO05D001962 8.5e-12 73.9 99 43.4
RcHm_v2.0_Chr7g0192691 Rosa chinensis HOM05D002645 ORTHO05D002741 1.1e-11 73.6 106 44.3
SalBow5G2166 Salvia bowleyana HOM05D002645 ORTHO05D002741 1.1e-11 73.6 75 53.3
SalBow5G4247 Salvia bowleyana HOM05D002645 ORTHO05D002741 1.1e-11 73.6 75 53.3
TWI23G1108 Tripterygium wilfordii HOM05D002645 ORTHO05D002741 1.1e-11 73.6 99 45.5
Cfa019206 Carpinus fangiana HOM05D002645 ORTHO05D002741 1.4e-11 73.2 101 43.6
Nn3g16713 Nelumbo nucifera HOM05D002645 ORTHO05D002741 1.9e-11 72.8 68 54.4
TAR622G0286 Trochodendron aralioides HOM05D002645 ORTHO05D002741 1.9e-11 72.8 78 51.3
Phvul.003G204300 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 2.5e-11 72.4 101 42.6
Lsat_1_v5_gn_5_14161 Lactuca sativa HOM05D002645 ORTHO05D002741 4.2e-11 71.6 99 41.4
VMungo1215G2500 Vigna mungo HOM05D002645 ORTHO05D002741 4.2e-11 71.6 101 43.6
Duzib205G0806 Durio zibethinus HOM05D002645 ORTHO05D002741 5.5e-11 71.2 64 60.9
arahy.Tifrunner.gnm1.ann1.U2N233 Arachis hypogaea HOM05D002645 ORTHO05D002741 9.4e-11 70.5 67 56.7
FvH4_5g06120 Fragaria vesca HOM05D002645 ORTHO05D002741 9.4e-11 70.5 106 41.5
HanXRQChr05g0155321 Helianthus annuus HOM05D002645 ORTHO05D002741 9.4e-11 70.5 99 43.4
PGR044G1459 Punica granatum HOM05D002645 ORTHO05D002741 1.2e-10 70.1 101 44.6
FAN08G0747 Fragaria x ananassa HOM05D002645 ORTHO05D002741 2.1e-10 69.3 106 40.6
FAN13G2482 Fragaria x ananassa HOM05D002645 ORTHO05D002741 2.7e-10 68.9 106 40.6
ECA246G4176 Erigeron canadensis HOM05D002645 ORTHO05D002741 4.6e-10 68.2 111 43.2
Aqoxy3G01205 Aquilegia oxysepala HOM05D002645 ORTHO05D002741 6.1e-10 67.8 66 50.0
Prupe.5G166500 Prunus persica HOM05D002645 ORTHO05D002741 1.0e-09 67.0 48 64.6
MD06G1166500 Malus domestica HOM05D002645 ORTHO05D002741 1.4e-09 66.6 112 38.4
FAN04G0990 Fragaria x ananassa HOM05D002645 ORTHO05D002741 1.8e-09 66.2 105 41.0
MD14G1172200 Malus domestica HOM05D002645 ORTHO05D002741 1.5e-08 63.2 70 55.7
Cpa.g.sc110.4 Carica papaya HOM05D002645 ORTHO05D002741 5.7e-08 61.2 91 45.1
CANSAT80G0636 Cannabis sativa HOM05D002645 ORTHO05D002741 1.7e-07 59.7 84 34.5
AUR62008154 Chenopodium quinoa HOM05D002645 ORTHO05D002741 1.7e-07 59.7 70 45.7
EL10Ac5g10665 Beta vulgaris HOM05D002645 ORTHO05D002741 1.4e-06 56.6 58 48.3
ATR0824G127 Amborella trichopoda HOM05D002645 ORTHO05D002741 2.4e-06 55.8 66 43.9
Ah.02g110670 Amaranthus hybridus HOM05D000032 ORTHO05D002561 3.1e-06 55.5 63 46.0
Sc04g0001570 Simmondsia chinensis HOM05D002645 ORTHO05D002741 3.1e-06 55.5 58 46.6
Oeu036512.1 Olea europaea HOM05D002645 ORTHO05D002741 5.3e-06 54.7 45 66.7


User provided reference genes

Program Settings