Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 3.4e-167 591.7 315 100.0
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 4.8e-161 571.2 315 96.2
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.1e-148 529.3 314 91.1
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 4.5e-127 458.4 308 80.8
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 9.8e-98 360.9 308 65.6
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.4e-96 357.1 308 64.3
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.4e-96 356.3 306 65.0
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 3.2e-96 355.9 307 64.5
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 9.2e-96 354.4 309 65.0
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.2e-95 354.0 303 64.7
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 3.5e-95 352.4 309 64.4
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 1.3e-86 323.9 303 59.1
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.3e-86 323.9 311 57.9
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 4.3e-85 318.9 345 51.6
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 9.5e-85 317.8 316 57.0
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.2e-84 317.4 316 57.0
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 4.0e-83 312.4 338 52.1
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 1.2e-82 310.8 319 54.5
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.0e-82 310.1 314 58.0
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.3e-78 297.4 313 54.6
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 4.7e-76 288.9 312 52.2
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 6.4e-73 278.5 316 51.9
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 2.7e-71 273.1 312 50.6
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.3e-70 270.8 307 51.5
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 5.1e-70 268.9 311 51.1
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 3.3e-69 266.2 306 51.0
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.3e-69 265.8 310 50.0
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 6.2e-68 261.9 325 47.1
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 6.2e-68 261.9 367 43.6
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 3.1e-67 259.6 319 46.4
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 4.0e-67 259.2 310 47.7
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 9.0e-67 258.1 310 47.4
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 4.5e-66 255.8 333 48.9
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 4.9e-65 252.3 311 48.2
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.9e-64 250.4 299 49.2
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.9e-64 250.4 329 45.3
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 3.2e-64 249.6 310 49.4
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 4.2e-64 249.2 312 47.8
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 5.4e-64 248.8 306 45.8
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 9.3e-64 248.1 319 46.7
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.1e-63 246.9 307 48.5
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 2.1e-63 246.9 310 48.7
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.3e-62 244.2 314 47.8
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 1.8e-62 243.8 302 46.7
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 2.3e-62 243.4 310 46.1
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 3.0e-62 243.0 311 46.6
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 6.7e-62 241.9 338 46.7
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 6.7e-62 241.9 314 48.4
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 8.7e-62 241.5 314 46.8
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 1.1e-61 241.1 311 46.0
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 1.9e-61 240.4 306 46.1
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 2.5e-61 240.0 313 48.2
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 2.5e-61 240.0 333 43.5
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 2.8e-60 236.5 263 53.2
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 2.8e-60 236.5 285 48.4
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 3.7e-60 236.1 306 48.7
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.1e-59 234.6 341 43.7
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-59 234.6 311 44.1
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 2.4e-59 233.4 309 44.7
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 3.1e-59 233.0 302 45.4
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.2e-58 231.1 266 52.6
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 1.5e-58 230.7 311 43.4
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 2.6e-58 229.9 311 46.3
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.4e-58 229.6 305 46.9
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 3.4e-58 229.6 302 46.0
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 7.6e-58 228.4 309 43.0
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 9.9e-58 228.0 333 45.6
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 3.8e-57 226.1 310 46.1
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 3.8e-57 226.1 318 44.0
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 8.4e-57 224.9 322 41.9
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.4e-56 224.2 234 53.0
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 4.2e-56 222.6 321 43.0
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 5.5e-56 222.2 301 44.5
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 7.1e-56 221.9 266 49.2
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 9.3e-56 221.5 301 44.2
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 9.3e-56 221.5 313 41.9
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.6e-55 220.7 266 49.2
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 1.0e-54 218.0 231 50.2
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.0e-54 218.0 266 48.5
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 2.3e-54 216.9 297 43.4
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 3.0e-54 216.5 337 43.0
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 3.0e-54 216.5 244 51.6
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 3.0e-54 216.5 300 41.7
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 8.7e-54 214.9 358 41.9
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-53 214.5 304 42.8
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-53 214.5 234 46.6
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.3e-52 211.1 230 47.4
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.3e-52 211.1 310 44.2
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.8e-52 209.9 279 44.4
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 4.8e-52 209.1 296 42.9
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 2.4e-51 206.8 353 39.7
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 3.1e-51 206.5 296 41.9
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 4.0e-51 206.1 319 41.4
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 5.3e-51 205.7 262 45.4
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 6.9e-51 205.3 238 49.6
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 1.5e-50 204.1 320 42.2
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.5e-50 204.1 237 49.4
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.6e-50 203.4 268 46.6
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 5.8e-50 202.2 312 41.3
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 2.2e-49 200.3 290 43.4
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 3.8e-49 199.5 312 40.7
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.8e-49 199.5 258 44.6
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 8.4e-49 198.4 311 38.9
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 8.4e-49 198.4 270 46.7
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 9.3e-48 194.9 317 38.8
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.2e-47 194.5 320 40.0
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 1.8e-46 190.7 312 38.8
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 3.9e-46 189.5 282 43.3
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 3.9e-46 189.5 322 37.3
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 1.1e-45 188.0 320 39.7
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.9e-45 187.2 309 37.9
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 2.5e-45 186.8 309 37.9
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 2.5e-45 186.8 318 39.9
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 4.3e-45 186.0 312 37.5
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 3.7e-44 183.0 218 48.2
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 6.3e-44 182.2 184 53.8
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.1e-43 181.4 305 39.7
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 3.1e-43 179.9 308 36.7
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 1.2e-42 177.9 238 45.8
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 2.9e-41 173.3 310 36.8
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.9e-41 173.3 313 36.1
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 3.8e-41 172.9 310 36.5
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 2.1e-39 167.2 265 38.9
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.1e-37 161.4 307 37.1
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 3.1e-35 153.3 318 35.8
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 4.1e-35 152.9 207 41.5
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 2.2e-33 147.1 196 44.9
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.5e-32 143.7 270 38.9
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 6.1e-31 139.0 222 41.4
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 7.9e-31 138.7 310 33.9
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.8e-30 137.5 319 32.3
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.6e-29 133.7 133 48.1
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 1.3e-28 131.3 218 34.9
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.1e-27 128.3 234 33.8
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 2.1e-23 114.0 287 30.3
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 6.1e-23 112.5 145 40.0
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 8.2e-20 102.1 206 34.0
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.8e-19 100.9 151 40.4
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 5.3e-19 99.4 148 37.8
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.7e-17 94.4 185 36.8
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.9e-16 90.9 149 36.2
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 1.2e-15 88.2 251 33.1
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.7e-15 87.0 170 31.8
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 1.4e-14 84.7 243 33.3
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.4e-14 84.7 69 60.9
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 2.3e-14 84.0 182 31.9
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.3e-14 84.0 192 31.2
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 7.5e-13 79.0 126 34.1
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 9.7e-13 78.6 191 31.9
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 2.4e-11 73.9 96 49.0
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 2.9e-09 67.0 66 53.0
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 2.5e-08 63.9 99 42.4
PRCOL_00005442 Prasinoderma coloniale HOM05D004617 ORTHO05D005531 2.5e-08 63.9 113 33.6


User provided reference genes

Program Settings