Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 1.5e-163 579.7 343 100.0
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 3.7e-151 538.5 327 98.8
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 1.2e-138 496.9 327 92.7
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 6.9e-113 411.4 333 72.4
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 6.5e-111 404.8 333 70.6
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 7.9e-101 371.3 357 62.2
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 3.4e-67 259.6 348 48.0
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 1.4e-65 254.2 358 46.6
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 5.4e-65 252.3 371 51.5
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 9.1e-65 251.5 350 50.0
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 2.0e-64 250.4 362 48.1
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 7.7e-64 248.4 337 50.1
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.0e-63 248.1 350 47.1
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 6.6e-63 245.4 350 46.6
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 2.5e-62 243.4 357 45.7
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 4.2e-62 242.7 356 46.9
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 4.2e-62 242.7 339 47.5
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 9.5e-62 241.5 362 45.9
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 1.6e-61 240.7 361 46.5
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 6.1e-61 238.8 357 47.9
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 1.0e-60 238.0 330 47.9
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.8e-60 237.3 349 45.8
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.3e-60 236.9 353 54.1
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.0e-60 236.5 354 48.3
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 4.0e-60 236.1 363 47.9
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.2e-59 234.6 354 48.9
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.5e-59 234.2 367 48.0
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 2.6e-59 233.4 351 51.3
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 4.4e-59 232.6 349 46.4
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 4.4e-59 232.6 361 52.1
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 7.5e-59 231.9 356 46.3
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 1.3e-58 231.1 357 46.8
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 3.7e-58 229.6 357 49.3
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 4.9e-58 229.2 350 46.0
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 8.3e-58 228.4 372 44.1
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 8.3e-58 228.4 346 46.2
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 2.4e-57 226.9 378 42.9
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 3.2e-57 226.5 342 45.9
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 5.4e-57 225.7 354 45.5
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 5.4e-57 225.7 334 47.0
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 5.4e-57 225.7 351 44.4
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 7.0e-57 225.3 329 45.6
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.6e-56 224.2 354 45.5
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 2.3e-55 220.3 364 46.7
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 2.9e-55 219.9 340 46.5
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 5.0e-55 219.2 350 47.4
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 2.5e-54 216.9 335 49.9
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.3e-54 216.1 402 40.0
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 5.6e-54 215.7 339 44.8
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 9.5e-54 214.9 368 42.1
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 1.2e-53 214.5 346 47.1
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 1.6e-53 214.2 358 42.7
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 8.0e-53 211.8 364 45.1
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 1.0e-52 211.5 351 44.2
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 1.8e-52 210.7 390 47.4
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 2.3e-52 210.3 352 45.2
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 1.5e-51 207.6 351 43.0
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 1.7e-50 204.1 377 40.3
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 1.7e-50 204.1 332 43.7
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 6.4e-50 202.2 341 43.4
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 6.4e-50 202.2 332 44.3
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 5.0e-47 192.6 420 40.2
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 1.5e-46 191.0 283 45.9
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 9.5e-46 188.3 370 39.7
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 2.1e-45 187.2 301 44.5
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 4.7e-45 186.0 282 43.6
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 3.4e-43 179.9 320 41.9
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 1.3e-42 177.9 472 37.7
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 8.3e-42 175.3 422 40.8
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 8.6e-39 165.2 350 40.0
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.1e-38 164.9 362 38.1
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 2.5e-38 163.7 311 39.5
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 7.3e-38 162.2 355 37.5
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 1.2e-37 161.4 346 37.9
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.6e-37 161.0 364 37.4
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 2.8e-37 160.2 402 34.3
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 4.7e-37 159.5 405 35.1
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.8e-36 157.5 351 39.0
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 3.1e-36 156.8 364 37.6
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 2.0e-35 154.1 351 37.3
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 3.4e-35 153.3 354 36.7
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 3.7e-34 149.8 291 40.2
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 4.9e-34 149.4 369 35.5
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 1.9e-33 147.5 331 40.5
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 2.4e-33 147.1 372 34.7
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 7.1e-33 145.6 355 34.9
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 2.1e-32 144.1 270 39.6
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 2.7e-32 143.7 323 38.7
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 6.0e-32 142.5 354 35.6
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 2.3e-31 140.6 348 35.9
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 6.6e-31 139.0 164 53.0
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 8.1e-29 132.1 372 32.0
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 1.1e-28 131.7 348 33.0
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 2.4e-28 130.6 346 39.9
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 4.0e-28 129.8 357 35.3
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 7.6e-27 125.6 296 35.5
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.1e-25 121.7 343 31.2
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 1.4e-25 121.3 343 31.2
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.3e-21 108.2 231 40.3
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 6.9e-20 102.4 190 43.7
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 9.0e-20 102.1 328 33.2
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 4.2e-17 93.2 301 33.9
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 1.6e-16 91.3 396 30.3
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.6e-13 81.3 297 29.3
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 4.8e-13 79.7 133 40.6
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 8.1e-13 79.0 58 62.1
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.8e-12 77.8 58 60.3
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.8e-12 77.8 48 70.8
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.4e-12 77.4 49 67.3
MSTRG.11411 Avicennia marina HOM05D006327 ORTHO05D007952 5.3e-12 76.3 104 43.3
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.3e-12 76.3 58 58.6
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.3e-12 76.3 58 58.6
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.6e-11 73.9 58 58.6
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.5e-11 73.2 58 56.9
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.5e-11 73.2 58 56.9
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.7e-10 71.2 49 63.3
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.4e-10 69.3 58 55.2
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 3.5e-08 63.5 58 48.3
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 6.0e-08 62.8 59 50.8
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 5.1e-07 59.7 197 30.5
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 1.1e-06 58.5 58 60.3
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 7.4e-06 55.8 43 60.5


User provided reference genes

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