Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 0.0e+00 1667.5 839 100.0
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 0.0e+00 1612.8 856 95.9
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 0.0e+00 1086.2 868 69.7
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 4.8e-309 1064.3 919 65.6
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 7.2e-305 1050.4 867 67.9
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 7.7e-299 1030.4 550 94.0
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 1.7e-298 1029.2 892 66.4
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 1.1e-177 627.9 909 47.7
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 7.0e-175 618.6 874 46.8
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 5.0e-173 612.5 955 45.1
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 5.3e-167 592.4 947 45.3
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 3.5e-158 563.1 937 43.5
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 1.3e-157 561.2 936 42.6
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 8.0e-155 552.0 1000 42.9
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 3.0e-154 550.1 944 41.8
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 1.2e-153 548.1 548 57.7
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 4.9e-152 542.7 875 44.1
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 2.3e-149 533.9 865 43.8
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 2.5e-148 530.4 901 42.3
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 7.3e-148 528.9 967 42.5
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 2.3e-146 523.9 886 41.8
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 5.2e-146 522.7 875 43.4
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.0e-145 520.8 1013 40.7
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 7.5e-145 518.8 902 42.7
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 1.7e-144 517.7 877 42.3
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 4.1e-143 513.1 778 45.5
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 4.1e-143 513.1 938 42.1
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.0e-142 510.8 1077 38.5
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 6.0e-142 509.2 882 42.6
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.0e-141 508.4 868 42.2
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 1.9e-140 504.2 874 42.8
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 1.9e-140 504.2 623 51.2
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 2.1e-139 500.7 868 42.5
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 5.2e-138 496.1 970 40.7
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 7.5e-137 492.3 956 40.8
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 2.2e-136 490.7 1009 38.6
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 2.4e-135 487.3 873 42.2
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 9.2e-135 485.3 953 40.3
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 2.7e-134 483.8 904 42.0
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 6.6e-133 479.2 867 41.8
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 6.6e-133 479.2 882 40.9
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 1.9e-132 477.6 563 53.1
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 4.3e-132 476.5 873 40.7
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 1.6e-131 474.6 859 41.6
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.6e-131 474.6 558 52.9
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.8e-130 471.1 564 52.5
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 1.2e-129 468.4 564 51.6
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 1.2e-129 468.4 869 41.8
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 9.9e-129 465.3 511 54.0
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 1.7e-128 464.5 863 39.5
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 2.9e-128 463.8 871 40.5
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 1.4e-127 461.5 865 40.7
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 2.4e-127 460.7 1098 35.5
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 3.2e-127 460.3 867 39.9
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 1.2e-126 458.4 535 52.3
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 1.6e-126 458.0 944 40.5
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 2.7e-126 457.2 453 55.2
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 2.7e-126 457.2 511 53.6
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.8e-126 455.7 856 40.2
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 5.1e-125 453.0 498 53.6
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 1.5e-124 451.4 510 52.5
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.9e-124 451.1 857 40.6
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 1.6e-123 448.0 586 49.1
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 2.8e-123 447.2 890 39.3
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 1.4e-122 444.9 615 45.7
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.4e-122 444.1 905 39.3
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.0e-122 443.4 842 40.5
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 5.2e-122 443.0 530 50.4
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 6.8e-122 442.6 870 39.1
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 3.4e-121 440.3 492 53.9
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 7.6e-121 439.1 972 38.6
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 2.9e-120 437.2 405 58.3
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 1.9e-119 434.5 867 38.3
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 5.4e-119 433.0 867 38.9
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 4.7e-115 419.9 482 50.8
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 1.1e-114 418.7 865 37.9
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 1.5e-113 414.8 463 52.7
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 3.4e-113 413.7 856 38.2
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 5.4e-111 406.4 491 50.3
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 7.1e-111 406.0 816 39.1
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 1.7e-109 401.4 473 50.5
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 2.3e-109 401.0 409 55.5
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.5e-108 398.3 408 55.1
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 7.3e-108 396.0 388 56.4
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 9.6e-108 395.6 472 48.7
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 3.6e-107 393.7 412 53.2
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 3.6e-107 393.7 434 51.6
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 3.1e-106 390.6 431 51.7
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 2.0e-105 387.9 851 37.1
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 2.6e-105 387.5 400 53.8
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 5.8e-105 386.3 874 36.0
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 7.6e-105 386.0 638 41.8
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 2.2e-104 384.4 950 36.3
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 8.4e-104 382.5 556 45.5
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 3.2e-103 380.6 461 48.6
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 5.4e-103 379.8 844 35.8
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 6.2e-99 366.3 500 47.4
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 9.9e-97 359.0 853 35.8
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 6.0e-94 349.7 417 50.1
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 1.0e-88 332.4 427 46.4
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 2.3e-85 321.2 530 42.3
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 3.7e-83 313.9 282 57.8
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 4.3e-76 290.4 793 36.1
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 1.3e-64 252.3 642 35.7
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 3.2e-63 247.7 536 35.4
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 2.3e-61 241.5 298 47.7
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 8.6e-32 143.3 205 38.0
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 1.9e-31 142.1 101 71.3
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 3.6e-30 137.9 117 62.4
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 3.5e-25 121.3 174 43.7
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 1.1e-18 99.8 132 48.5
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.9e-18 99.0 90 58.9
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 6.2e-14 84.0 92 57.6
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 7.8e-09 67.0 139 37.4
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 1.3e-08 66.2 68 51.5
Dinv19923 Davidia involucrata HOM05D006304 ORTHO05D008584 1.1e-07 63.2 109 42.2


User provided reference genes

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