Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 7.1e-226 786.9 401 100.0
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 1.6e-222 775.8 401 98.8
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 3.4e-212 741.5 401 93.5
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.5e-178 629.0 393 78.1
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 6.7e-176 620.9 393 78.6
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 6.9e-173 610.9 393 76.1
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 2.7e-161 572.4 396 72.7
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 2.3e-131 473.0 396 58.1
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 9.5e-130 467.6 395 57.0
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 1.2e-127 460.7 393 59.5
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 8.3e-126 454.5 393 56.7
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 9.2e-125 451.1 393 58.0
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.2e-124 450.7 393 55.5
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.0e-123 447.6 393 55.2
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 1.2e-121 440.7 393 55.2
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 3.6e-121 439.1 373 57.1
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 2.3e-115 419.9 395 52.7
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.9e-114 416.8 389 52.4
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 4.3e-114 415.6 390 53.6
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 1.6e-113 413.7 399 51.9
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 2.1e-113 413.3 393 50.6
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 6.2e-113 411.8 393 53.2
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 9.9e-111 404.4 376 52.4
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 1.7e-110 403.7 389 51.2
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 8.4e-110 401.4 393 50.6
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 3.2e-109 399.4 389 50.1
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 5.4e-109 398.7 390 51.3
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 3.5e-108 396.0 391 49.4
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 5.1e-107 392.1 393 49.9
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.1e-106 391.0 391 50.4
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.1e-106 391.0 391 51.2
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 1.1e-106 391.0 389 48.8
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 1.9e-106 390.2 393 50.4
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 3.3e-106 389.4 390 50.8
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 5.6e-106 388.7 391 50.6
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 1.6e-105 387.1 391 48.1
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 2.1e-105 386.7 390 50.8
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 6.2e-105 385.2 389 47.8
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 1.1e-104 384.4 389 49.9
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.8e-104 383.6 389 48.6
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 2.4e-104 383.3 392 48.0
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 5.2e-104 382.1 392 48.0
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 6.9e-104 381.7 395 50.1
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 6.9e-104 381.7 407 49.6
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 1.2e-103 380.9 393 48.6
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.4e-103 379.4 392 47.4
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 3.4e-103 379.4 394 49.7
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 5.8e-103 378.6 394 47.5
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.8e-103 378.6 392 47.4
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 7.6e-103 378.3 392 47.2
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 2.2e-102 376.7 390 46.9
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 2.9e-102 376.3 391 48.3
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 6.4e-102 375.2 389 49.4
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.4e-101 374.0 389 47.8
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.9e-101 373.6 388 48.5
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 4.2e-101 372.5 395 47.3
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 9.3e-101 371.3 391 46.8
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 1.2e-100 370.9 390 46.7
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 2.1e-100 370.2 396 47.2
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 7.8e-100 368.2 393 46.1
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 7.8e-100 368.2 393 46.1
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 1.7e-99 367.1 394 46.7
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.5e-98 364.0 389 46.0
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 3.3e-98 362.8 393 45.8
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 4.3e-98 362.5 389 45.8
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 9.6e-98 361.3 392 48.2
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 2.1e-97 360.1 345 50.7
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 2.8e-97 359.8 392 46.7
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 3.6e-97 359.4 394 46.7
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 6.2e-97 358.6 391 46.3
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 8.1e-97 358.2 390 46.7
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 1.1e-96 357.8 390 49.7
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 1.1e-96 357.8 393 45.5
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 1.1e-96 357.8 390 45.1
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 1.4e-96 357.5 394 46.2
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 1.2e-95 354.4 410 43.9
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 3.4e-95 352.8 393 47.6
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 5.8e-95 352.1 395 46.6
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 1.3e-94 350.9 390 46.9
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 2.9e-94 349.7 399 46.1
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 3.8e-94 349.4 389 45.8
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 1.1e-93 347.8 399 45.4
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 1.4e-93 347.4 390 44.4
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 5.4e-93 345.5 392 46.7
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 9.3e-93 344.7 394 45.9
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 1.6e-92 344.0 399 44.4
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 6.0e-92 342.0 396 44.7
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 7.9e-92 341.7 389 42.9
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.0e-91 341.3 400 43.5
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.8e-91 340.5 389 42.4
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 1.9e-90 337.0 397 45.8
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 7.4e-90 335.1 417 42.0
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 9.6e-90 334.7 397 45.1
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 1.6e-89 334.0 391 45.0
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 5.8e-87 325.5 416 39.7
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 5.8e-87 325.5 416 39.7
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 1.4e-85 320.9 416 38.9
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 1.9e-85 320.5 310 54.5
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.9e-85 320.5 398 40.7
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 1.2e-84 317.8 334 48.8
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 3.5e-84 316.2 418 39.7
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 2.3e-83 313.5 401 41.4
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 5.6e-82 308.9 262 58.4
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.3e-81 307.8 398 42.0
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 5.3e-80 302.4 400 40.5
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.3e-78 297.7 267 54.7
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 3.8e-78 296.2 397 39.3
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.2e-76 291.2 290 52.4
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 1.6e-76 290.8 374 39.3
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 6.0e-76 288.9 397 39.3
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 8.7e-75 285.0 341 44.3
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 4.6e-60 236.1 180 63.9
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 1.3e-57 228.0 422 33.9
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.1e-40 171.8 263 35.0
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 1.8e-35 154.5 270 34.1
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 6.3e-33 146.0 262 34.4
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 1.4e-32 144.8 211 42.2
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 1.4e-32 144.8 402 28.4
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 6.3e-25 119.4 298 28.9
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 1.0e-22 112.1 249 29.7
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 5.0e-22 109.8 394 24.1
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 5.0e-22 109.8 394 24.1
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.1e-21 108.6 427 27.4
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 4.3e-21 106.7 258 28.7
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 5.6e-21 106.3 180 36.7
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 6.1e-20 102.8 297 24.2
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 6.8e-19 99.4 180 36.7
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 2.3e-14 84.3 101 43.6
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 1.5e-13 81.6 354 23.7
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 2.0e-10 71.2 280 26.8
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 3.2e-08 63.9 93 44.1


User provided reference genes

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