Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 7.4e-182 640.6 362 100.0
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 3.2e-177 625.2 362 97.5
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.3e-133 480.3 368 79.6
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.6e-128 463.4 369 78.0
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.6e-128 462.2 359 79.4
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 2.3e-119 433.0 376 72.9
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 8.9e-103 377.9 329 69.6
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.3e-98 364.0 369 65.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.1e-96 356.7 374 63.9
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 5.3e-87 325.5 371 59.3
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.1e-84 317.8 354 59.9
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.4e-84 317.4 370 57.3
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 8.7e-82 308.1 368 57.6
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.5e-81 306.6 364 54.9
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 5.8e-78 295.4 367 55.9
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 3.8e-77 292.7 367 54.0
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.1e-76 291.2 370 54.6
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.9e-76 290.4 366 54.9
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.4e-76 290.0 372 55.6
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 1.2e-75 287.7 369 53.9
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 1.6e-75 287.3 367 54.5
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.5e-75 286.2 386 51.8
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 6.0e-75 285.4 372 52.7
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.3e-74 283.5 370 53.2
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.0e-74 283.1 372 52.7
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 3.9e-74 282.7 340 55.9
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 3.9e-74 282.7 342 57.0
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 3.9e-74 282.7 351 53.3
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 6.7e-74 282.0 370 53.2
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 8.7e-74 281.6 368 53.8
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.5e-73 280.0 361 53.5
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.3e-72 277.7 371 53.4
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.6e-72 277.3 367 52.0
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.0e-71 271.6 374 51.9
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 2.6e-70 270.0 368 51.4
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.3e-69 267.7 368 52.2
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.7e-69 267.3 343 54.8
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 6.5e-69 265.4 369 53.4
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.1e-68 264.6 363 50.4
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.4e-68 264.2 375 53.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.5e-68 263.5 333 53.2
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 3.5e-67 259.6 370 51.4
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 4.6e-67 259.2 367 49.3
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.3e-66 256.9 356 52.0
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.3e-66 256.9 359 51.8
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 3.9e-66 256.1 377 50.1
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 2.5e-65 253.4 313 54.0
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 9.7e-65 251.5 364 49.7
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 9.7e-65 251.5 355 49.9
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.2e-64 250.4 354 50.8
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 6.3e-64 248.8 367 50.4
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 8.2e-64 248.4 368 49.7
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.8e-63 247.3 336 51.8
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.4e-63 246.9 368 47.6
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.6e-62 243.4 371 49.6
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 5.9e-62 242.3 367 48.2
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.7e-61 240.7 362 47.8
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.2e-61 240.4 375 49.6
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 3.8e-61 239.6 373 48.8
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 5.0e-61 239.2 376 48.4
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 6.5e-61 238.8 374 48.7
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 2.5e-60 236.9 357 48.5
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.2e-60 236.5 370 47.3
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 3.2e-60 236.5 363 47.9
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 1.2e-59 234.6 370 48.9
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-59 234.6 358 48.9
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-59 234.6 357 47.9
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 3.6e-59 233.0 366 46.2
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 4.6e-59 232.6 370 49.7
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.8e-58 230.7 368 48.4
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 3.0e-58 229.9 371 47.2
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 5.1e-58 229.2 373 46.6
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 3.3e-57 226.5 374 46.3
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.3e-57 226.1 355 47.0
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.3e-56 224.6 343 49.0
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.8e-56 222.6 361 46.5
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 6.3e-56 222.2 373 46.9
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 6.3e-56 222.2 344 45.9
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.8e-55 220.7 352 47.4
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 6.9e-55 218.8 368 46.7
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 5.9e-54 215.7 345 46.4
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 1.1e-52 211.5 385 46.5
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.1e-52 211.5 352 47.4
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 4.2e-52 209.5 364 42.9
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 5.5e-52 209.1 372 46.5
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 7.2e-52 208.8 379 46.2
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 3.6e-51 206.5 373 45.0
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 6.7e-50 202.2 352 45.7
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 8.8e-50 201.8 376 45.5
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 8.8e-50 201.8 408 42.4
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.1e-49 201.4 393 43.3
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.6e-49 200.3 331 47.7
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 3.3e-49 199.9 323 51.1
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 5.7e-49 199.1 365 45.5
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 1.3e-48 198.0 354 45.2
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 4.8e-48 196.1 374 43.3
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.8e-47 194.1 298 49.0
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 9.1e-47 191.8 374 44.7
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 3.4e-46 189.9 253 51.0
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 5.9e-46 189.1 363 43.5
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.0e-45 188.3 325 41.8
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 3.8e-45 186.4 373 44.2
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.8e-45 186.4 377 42.7
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 6.5e-45 185.7 360 42.5
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 6.5e-45 185.7 363 44.9
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.1e-44 184.9 375 43.5
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 9.4e-44 181.8 368 42.7
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 9.4e-44 181.8 357 44.5
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 9.4e-44 181.8 295 49.2
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 5.2e-42 176.0 368 41.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 7.4e-41 172.2 397 38.5
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.8e-40 170.2 316 41.5
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 8.2e-40 168.7 358 41.9
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.4e-39 167.9 407 40.5
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 7.0e-39 165.6 349 40.4
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 9.1e-39 165.2 301 41.9
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.3e-37 161.4 354 38.7
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 8.5e-37 158.7 376 36.4
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.5e-36 157.9 351 38.2
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 1.6e-35 154.5 346 42.2
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 6.7e-34 149.1 316 38.3
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 4.4e-33 146.4 364 36.3
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 7.5e-33 145.6 267 42.7
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.3e-32 144.8 296 40.5
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 4.8e-32 142.9 360 37.2
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.1e-31 141.7 345 38.0
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 4.1e-31 139.8 372 34.1
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 5.9e-30 136.0 372 35.2
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 5.9e-30 136.0 372 35.2
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 5.9e-30 136.0 372 35.2
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 8.5e-29 132.1 340 35.6
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.8e-26 124.4 192 50.0
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 2.0e-22 110.9 455 29.9
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 2.2e-08 64.3 92 39.1
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 3.7e-08 63.5 139 30.9
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 8.3e-08 62.4 213 24.4
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.1e-07 62.0 122 33.6
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.2e-07 60.5 143 31.5
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 5.4e-07 59.7 209 33.0
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 5.4e-07 59.7 161 31.7
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 9.2e-07 58.9 138 31.2
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.6e-06 58.2 234 29.9
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 2.0e-06 57.8 137 29.2
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 2.0e-06 57.8 191 31.9
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 3.5e-06 57.0 205 30.2
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.5e-06 57.0 169 29.6
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 3.5e-06 57.0 224 28.6
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 4.6e-06 56.6 90 37.8
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 4.6e-06 56.6 85 30.6
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 7.8e-06 55.8 193 24.9


User provided reference genes

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