Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 8.1e-210 733.4 349 100.0
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.6e-186 656.0 316 98.4
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.8e-185 652.5 316 98.1
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.9e-182 642.5 353 89.2
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.3e-172 609.8 344 86.9
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 4.6e-165 584.7 315 87.9
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.9e-158 562.8 318 86.2
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.9e-152 541.2 316 80.1
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-151 540.4 317 81.1
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 3.8e-151 538.5 319 80.3
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.4e-150 536.6 332 76.5
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.6e-149 531.9 317 76.3
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.4e-148 530.0 315 75.9
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.2e-146 522.7 315 74.9
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 4.8e-146 521.5 315 76.8
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.4e-145 520.0 316 76.3
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.4e-145 520.0 315 76.8
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.8e-145 519.6 316 76.3
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.3e-143 513.5 320 75.3
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.8e-143 511.9 324 72.5
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 3.8e-143 511.9 323 75.5
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.1e-142 510.4 315 74.3
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 3.2e-142 508.8 314 72.9
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 3.2e-142 508.8 315 75.2
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 5.5e-142 508.1 317 72.9
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 9.4e-142 507.3 315 75.9
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.6e-141 506.5 322 73.6
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.6e-141 506.5 316 74.4
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.1e-141 506.1 316 73.1
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 2.7e-141 505.8 316 72.8
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 3.6e-141 505.4 316 72.5
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 1.8e-140 503.1 316 73.7
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 3.0e-140 502.3 317 72.9
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 5.2e-140 501.5 337 71.8
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.8e-140 500.7 317 76.0
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.5e-139 500.0 316 73.4
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 5.7e-139 498.0 316 74.1
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 1.3e-138 496.9 315 72.4
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.2e-138 496.1 315 71.7
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.2e-138 496.1 318 73.3
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.2e-138 496.1 315 72.7
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 4.8e-138 495.0 315 72.1
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.1e-137 493.8 315 72.4
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 3.1e-137 492.3 316 72.5
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 3.1e-137 492.3 341 67.4
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 4.1e-137 491.9 316 70.3
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 7.0e-137 491.1 316 73.1
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.2e-136 490.3 317 72.2
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.6e-136 490.0 316 70.6
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 2.0e-136 489.6 316 71.8
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 4.5e-136 488.4 315 69.8
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 7.7e-136 487.6 316 70.6
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.0e-135 487.3 317 71.0
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.0e-135 487.3 316 70.6
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.3e-135 486.9 324 68.5
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 5.0e-135 485.0 317 69.1
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.0e-135 485.0 324 70.7
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 6.5e-135 484.6 321 70.1
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.5e-134 483.4 314 70.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.5e-134 483.4 316 72.2
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.5e-134 483.4 319 69.9
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 2.5e-134 482.6 314 70.4
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.2e-134 481.9 315 70.2
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.2e-134 481.9 292 75.0
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 5.5e-134 481.5 319 69.9
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 5.5e-134 481.5 367 63.2
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 7.2e-134 481.1 337 67.1
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 9.4e-134 480.7 316 69.9
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.4e-134 480.7 319 69.9
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.6e-133 479.9 325 67.7
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.6e-133 479.9 316 70.9
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.6e-133 478.8 313 70.0
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 4.7e-133 478.4 317 69.4
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 4.7e-133 478.4 318 69.5
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 6.1e-133 478.0 315 68.9
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.0e-133 477.6 318 69.2
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 8.0e-133 477.6 303 74.3
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 8.0e-133 477.6 315 68.9
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.0e-132 477.2 369 63.4
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.0e-132 477.2 317 68.8
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.0e-132 475.7 321 69.5
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.2e-132 474.9 316 69.0
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 5.2e-132 474.9 315 69.5
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 5.2e-132 474.9 317 69.1
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 5.2e-132 474.9 317 69.1
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 5.2e-132 474.9 325 68.6
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 8.8e-132 474.2 315 69.2
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.5e-131 473.4 331 65.3
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.5e-131 473.4 320 70.3
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.0e-131 473.0 319 69.3
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 7.5e-131 471.1 320 69.4
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 1.3e-130 470.3 315 68.9
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.7e-130 469.9 318 66.7
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.2e-130 469.5 317 68.8
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 2.8e-130 469.2 319 67.7
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 2.8e-130 469.2 315 68.9
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 3.7e-130 468.8 315 68.6
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 4.8e-130 468.4 315 68.3
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 4.8e-130 468.4 316 69.3
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 3.1e-129 465.7 317 68.5
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 5.4e-129 464.9 315 68.9
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 9.1e-129 464.2 315 68.6
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-128 463.8 315 67.6
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.6e-128 463.4 320 68.8
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.7e-128 462.6 315 67.0
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 7.7e-128 461.1 315 67.3
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.2e-127 459.5 266 79.3
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.8e-127 458.8 316 69.3
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 8.5e-127 457.6 315 66.3
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.5e-126 456.8 329 66.3
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.5e-126 456.1 315 68.6
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.4e-124 450.3 316 67.4
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 3.0e-124 449.1 314 66.9
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.2e-124 448.4 316 65.8
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 5.2e-124 448.4 337 64.4
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.8e-124 448.0 317 66.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 2.0e-123 446.4 335 63.3
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 8.3e-122 441.0 314 64.6
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-121 440.7 289 75.4
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.1e-121 438.7 314 64.6
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 2.0e-120 436.4 389 56.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 1.7e-119 433.3 324 63.6
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.8e-119 432.2 316 64.2
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 2.3e-116 422.9 319 64.3
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.0e-116 422.5 404 53.7
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.1e-113 414.1 289 68.5
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.2e-112 410.6 316 61.7
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.0e-112 409.8 284 67.6
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.7e-111 406.8 316 62.7
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 8.0e-109 397.9 320 60.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.3e-106 390.6 332 57.2
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 2.9e-106 389.4 321 59.2
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.4e-105 387.1 242 76.0
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 9.5e-102 374.4 314 56.4
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.6e-101 373.6 182 98.4
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 5.2e-100 368.6 291 61.5
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 2.6e-99 366.3 321 56.7
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.2e-96 357.5 303 59.1
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.1e-93 346.7 225 72.0
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.7e-90 337.0 353 47.3
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.1e-80 303.5 199 71.4
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.4e-73 280.8 185 72.4
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 2.4e-73 280.0 219 61.2
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.9e-72 275.0 305 52.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 4.2e-65 252.7 144 80.6
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.7e-64 250.0 165 72.7
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 6.0e-64 248.8 190 64.7
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 6.9e-60 235.3 177 66.7
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.1e-54 218.0 140 67.1
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 3.4e-51 206.5 128 77.3
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.7e-48 196.8 148 62.8
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.5e-41 173.7 111 71.2
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.1e-39 166.0 126 65.1
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 6.9e-36 155.6 95 70.5
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.5e-30 137.9 92 72.8
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.6e-30 137.1 104 67.3
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 2.6e-30 137.1 89 64.0
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 3.5e-27 126.7 165 45.5
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 2.2e-26 124.0 90 65.6
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.2e-25 120.2 69 76.8
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 5.5e-25 119.4 67 79.1
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 4.7e-24 116.3 75 68.0
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 8.8e-23 112.1 75 66.7
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.4e-20 104.8 58 79.3
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 5.0e-18 96.3 72 63.9
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 2.7e-11 73.9 44 75.0
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 9.5e-09 65.5 41 70.7
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 8.9e-07 58.9 56 53.6
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 1.5e-06 58.2 80 41.2
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.5e-06 58.2 80 46.2
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 5.7e-06 56.2 45 66.7


User provided reference genes

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