Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g068690.4 Solanum lycopersicum HOM05D005461 ORTHO05D007157 3.5e-149 531.6 264 100.0
Sopen06g025970 Solanum pennellii HOM05D005461 ORTHO05D007157 1.3e-148 529.6 264 99.6
CAN.G1089.9 Capsicum annuum HOM05D005461 ORTHO05D007157 9.0e-137 490.3 264 91.7
Peaxi162Scf00207g00211 Petunia axillaris HOM05D005461 ORTHO05D007157 1.5e-131 473.0 271 86.7
Nitab4.5_0002679g0030 Nicotiana tabacum HOM05D005461 ORTHO05D007157 1.3e-130 469.9 264 87.5
Nitab4.5_0005215g0030 Nicotiana tabacum HOM05D005461 ORTHO05D007157 1.1e-129 466.8 263 86.7
Dinv23243 Davidia involucrata HOM05D002313 ORTHO05D003747 2.5e-123 445.7 262 80.5
Peaxi162Scf00314g00734 Petunia axillaris HOM05D005461 ORTHO05D007157 2.5e-123 445.7 260 81.9
Oeu012857.1 Olea europaea HOM05D005461 ORTHO05D007157 8.2e-122 440.7 261 78.9
Thecc.03G143100 Theobroma cacao HOM05D005461 ORTHO05D007157 1.2e-120 436.8 259 79.2
COL.COLO4_37281 Corchorus olitorius HOM05D005461 ORTHO05D007157 3.4e-120 435.3 264 77.7
Cc04_g05620 Coffea canephora HOM05D005461 ORTHO05D007157 5.9e-120 434.5 261 78.2
Gohir.A12G194800 Gossypium hirsutum HOM05D005461 ORTHO05D007157 1.0e-119 433.7 260 78.5
CSS0038399 Camellia sinensis var. sinensis HOM05D005461 ORTHO05D007157 3.8e-119 431.8 262 78.2
Gorai.012G153500 Gossypium raimondii HOM05D005461 ORTHO05D007157 3.8e-119 431.8 260 78.1
Lj9A488T69 Lonicera japonica HOM05D005461 ORTHO05D007157 5.0e-119 431.4 261 78.2
vmacro19100 Vaccinium macrocarpon HOM05D005461 ORTHO05D007157 6.5e-119 431.0 261 78.5
Gohir.D04G165100 Gossypium hirsutum HOM05D005461 ORTHO05D007157 1.1e-118 430.3 260 78.1
TAR633G0377 Trochodendron aralioides HOM05D005461 ORTHO05D007157 1.1e-118 430.3 259 79.2
DCAR_016327 Daucus carota HOM05D005461 ORTHO05D007157 1.9e-118 429.5 261 77.0
Actinidia18282 Actinidia chinensis HOM05D005461 ORTHO05D007157 4.2e-118 428.3 263 76.0
Nitab4.5_0011048g0010 Nicotiana tabacum HOM05D005461 ORTHO05D007157 7.2e-118 427.6 253 80.6
HanXRQChr06g0183731 Helianthus annuus HOM05D005461 ORTHO05D007157 9.4e-118 427.2 261 77.4
Rhsim08G0199900 Rhododendron simsii HOM05D005461 ORTHO05D007157 9.4e-118 427.2 261 78.2
CSS0050110 Camellia sinensis var. sinensis HOM05D005461 ORTHO05D007157 1.6e-117 426.4 261 77.4
PGSC0003DMG400014230 Solanum tuberosum HOM05D005461 ORTHO05D007157 1.6e-117 426.4 253 81.0
CSS0042507 Camellia sinensis var. sinensis HOM05D005461 ORTHO05D007157 2.1e-117 426.0 261 77.4
Nitab4.5_0000976g0230 Nicotiana tabacum HOM05D005461 ORTHO05D007157 3.6e-117 425.2 263 77.9
SalBow7G2149 Salvia bowleyana HOM05D005461 ORTHO05D007157 3.6e-117 425.2 260 77.3
AUR62036969 Chenopodium quinoa HOM05D005461 ORTHO05D007157 7.9e-117 424.1 261 76.2
MSTRG.22823 Avicennia marina HOM05D005461 ORTHO05D007157 1.4e-116 423.3 260 77.7
TWI23G0268 Tripterygium wilfordii HOM05D005461 ORTHO05D007157 1.8e-116 422.9 260 76.9
ECA246G4936 Erigeron canadensis HOM05D005461 ORTHO05D007157 3.0e-116 422.2 261 75.9
Gorai.008G211800 Gossypium raimondii HOM05D005461 ORTHO05D007157 3.0e-116 422.2 260 76.9
Migut.I00655 Erythranthe guttata HOM05D005461 ORTHO05D007157 6.7e-116 421.0 261 75.1
Hund02519 Selenicereus undatus HOM05D005461 ORTHO05D007157 8.8e-116 420.6 261 77.0
AUR62032200 Chenopodium quinoa HOM05D005461 ORTHO05D007157 1.1e-115 420.2 261 75.5
EL10Ac5g11262 Beta vulgaris HOM05D005461 ORTHO05D007157 2.0e-115 419.5 261 75.9
Ciclev10030921m.g Citrus clementina HOM05D005461 ORTHO05D007157 2.0e-115 419.5 260 76.2
Solyc03g118030.3 Solanum lycopersicum HOM05D005461 ORTHO05D007157 2.0e-115 419.5 253 78.3
Lsat_1_v5_gn_5_9480 Lactuca sativa HOM05D005461 ORTHO05D007157 3.3e-115 418.7 261 75.1
Sopen03g036930 Solanum pennellii HOM05D005461 ORTHO05D007157 3.3e-115 418.7 253 78.3
SGA_v2.0_scaffold5G02813 Striga asiatica HOM05D005461 ORTHO05D007157 3.3e-115 418.7 261 75.1
Aqoxy5G02973 Aquilegia oxysepala HOM05D005461 ORTHO05D007157 2.2e-114 416.0 259 74.9
Hma1.2p1_1333F.1_g276230 Hydrangea macrophylla HOM05D005461 ORTHO05D007157 2.2e-114 416.0 256 75.8
QL10p000170 Quercus lobata HOM05D005461 ORTHO05D007157 3.7e-114 415.2 256 77.0
CAN.G1008.41 Capsicum annuum HOM05D005461 ORTHO05D007157 1.1e-113 413.7 253 79.1
Hma1.2p1_1242F.1_g269870 Hydrangea macrophylla HOM05D005461 ORTHO05D007157 3.1e-113 412.1 256 75.0
PSO478G5039 Papaver somniferum HOM05D005461 ORTHO05D007157 6.9e-113 411.0 259 73.7
Manes.14G043000 Manihot esculenta HOM05D005461 ORTHO05D007157 9.1e-113 410.6 259 73.7
Thhalv10012903m.g Eutrema salsugineum HOM05D005461 ORTHO05D007157 1.2e-112 410.2 261 74.3
AL6G17660 Arabidopsis lyrata HOM05D005461 ORTHO05D007157 2.0e-112 409.5 260 73.8
FvH4_5g09971 Fragaria vesca HOM05D005461 ORTHO05D007157 5.9e-112 407.9 254 75.6
PSO017G0101 Papaver somniferum HOM05D005461 ORTHO05D007157 5.9e-112 407.9 259 74.1
Sp6g35510 Schrenkiella parvula HOM05D005461 ORTHO05D007157 5.9e-112 407.9 260 74.6
Ah.11g047030 Amaranthus hybridus HOM05D005461 ORTHO05D007157 1.3e-111 406.8 255 75.3
Nn3g16200 Nelumbo nucifera HOM05D005461 ORTHO05D007157 2.2e-111 406.0 250 76.8
AT5G07360 Arabidopsis thaliana HOM05D005461 ORTHO05D007157 2.9e-111 405.6 260 73.1
Manes.14G043100 Manihot esculenta HOM05D005461 ORTHO05D007157 2.9e-111 405.6 259 73.4
Hund02520 Selenicereus undatus HOM05D005461 ORTHO05D007157 5.0e-111 404.8 260 73.1
Atru.chr6.1950 Acer truncatum HOM05D005461 ORTHO05D007157 8.5e-111 404.1 242 78.9
CiPaw.11G031400 Carya illinoinensis HOM05D005461 ORTHO05D007157 1.1e-110 403.7 260 73.5
Lj4g0008483 Lotus japonicus HOM05D005461 ORTHO05D007157 1.1e-110 403.7 258 72.9
BcaC06g32446 Brassica carinata HOM05D005461 ORTHO05D007157 1.4e-110 403.3 260 73.1
CsaV3_3G003620 Cucumis sativus L. HOM05D005461 ORTHO05D007157 1.4e-110 403.3 261 74.3
Carub.0006s0633 Capsella rubella HOM05D005461 ORTHO05D007157 3.2e-110 402.1 260 72.3
Cfa018691 Carpinus fangiana HOM05D005461 ORTHO05D007157 3.2e-110 402.1 247 76.9
A10p29110 Brassica napus HOM05D005461 ORTHO05D007157 7.2e-110 401.0 260 73.1
BraA10t44960Z Brassica rapa HOM05D005461 ORTHO05D007157 7.2e-110 401.0 260 73.1
MELO3C014033.2 Cucumis melo HOM05D005461 ORTHO05D007157 7.2e-110 401.0 261 73.2
RcHm_v2.0_Chr7g0188291 Rosa chinensis HOM05D005461 ORTHO05D007157 9.4e-110 400.6 250 75.2
BcaC06g32445 Brassica carinata HOM05D005461 ORTHO05D007157 1.2e-109 400.2 261 73.2
C09p69500 Brassica napus HOM05D005461 ORTHO05D007157 1.2e-109 400.2 261 73.2
Prupe.5G138700 Prunus persica HOM05D005461 ORTHO05D007157 1.2e-109 400.2 255 74.9
Potri.015G109400 Populus trichocarpa HOM05D005461 ORTHO05D007157 2.1e-109 399.4 260 74.2
unitig_8.g3049 Utricularia gibba HOM05D005461 ORTHO05D007157 2.7e-109 399.1 261 73.2
PGR102G2106 Punica granatum HOM05D005461 ORTHO05D007157 4.7e-109 398.3 263 70.3
MD00G1076700 Malus domestica HOM05D005461 ORTHO05D007157 7.9e-109 397.5 252 77.0
BolC9t59694H Brassica oleracea HOM05D005461 ORTHO05D007157 1.4e-108 396.7 261 72.4
GSVIVG01019284001 Vitis vinifera HOM05D005461 ORTHO05D007157 1.4e-108 396.7 247 74.9
Cpa.g.sc13.197 Carica papaya HOM05D005461 ORTHO05D007157 1.8e-108 396.4 255 74.5
ClCG00G000370 Citrullus lanatus HOM05D005461 ORTHO05D007157 2.3e-108 396.0 271 72.0
FAN18G0482 Fragaria x ananassa HOM05D005461 ORTHO05D007157 2.3e-108 396.0 245 75.9
TPR.G12739 Trifolium pratense HOM05D005461 ORTHO05D007157 2.3e-108 396.0 258 71.7
Gohir.D12G197200 Gossypium hirsutum HOM05D005461 ORTHO05D007157 3.0e-108 395.6 237 77.6
Psat7g040200 Pisum sativum HOM05D005461 ORTHO05D007157 3.0e-108 395.6 258 72.5
Sabra15G0131600 Salix brachista HOM05D005461 ORTHO05D007157 6.7e-108 394.4 245 76.3
Sed0004824 Sechium edule HOM05D005461 ORTHO05D007157 6.7e-108 394.4 262 72.9
Lalb_Chr07g0183921 Lupinus albus HOM05D005461 ORTHO05D007157 8.8e-108 394.0 260 71.5
arahy.Tifrunner.gnm1.ann1.YX3IJQ Arachis hypogaea HOM05D005461 ORTHO05D007157 2.6e-107 392.5 258 72.5
Phvul.002G280000 Phaseolus vulgaris HOM05D005461 ORTHO05D007157 3.3e-107 392.1 261 70.5
Aa31LG3G19010 Aethionema arabicum HOM05D005461 ORTHO05D007157 4.4e-107 391.7 265 69.8
Ca_16815_v3 Cicer arietinum L. HOM05D005461 ORTHO05D007157 4.4e-107 391.7 258 71.7
FAN08G1284 Fragaria x ananassa HOM05D005461 ORTHO05D007157 5.7e-107 391.3 245 75.1
GSVIVG01019282001 Vitis vinifera HOM05D005461 ORTHO05D007157 9.7e-107 390.6 247 73.3
arahy.Tifrunner.gnm1.ann1.UDW2VH Arachis hypogaea HOM05D005461 ORTHO05D007157 1.7e-106 389.8 258 72.1
Eucgr.K02184 Eucalyptus grandis HOM05D005461 ORTHO05D007157 3.7e-106 388.7 256 71.9
FvH4_5g09970 Fragaria vesca HOM05D005461 ORTHO05D007157 3.7e-106 388.7 245 75.5
Medtr8g095600 Medicago truncatula HOM05D005461 ORTHO05D007157 4.8e-106 388.3 247 73.3
Aa31LG1G5760 Aethionema arabicum HOM05D005461 ORTHO05D007157 5.3e-105 384.8 251 73.3
Glyma.05G199000 Glycine max HOM05D005461 ORTHO05D007157 7.0e-105 384.4 249 72.3
CARHR205790 Cardamine hirsuta HOM05D005461 ORTHO05D007157 1.6e-104 383.3 259 69.9
GSVIVG01019287001 Vitis vinifera HOM05D005461 ORTHO05D007157 7.7e-104 380.9 243 73.7
MBI07_g42016_MAGBIO Magnolia biondii HOM05D005461 ORTHO05D007157 1.3e-103 380.2 240 73.8
HPP92_006437 Vanilla planifolia HOM05D005461 ORTHO05D007157 5.0e-103 378.3 248 71.8
FAN04G1626 Fragaria x ananassa HOM05D005461 ORTHO05D007157 1.9e-102 376.3 238 73.9
Os11g0536800 Oryza sativa ssp. japonica HOM05D005461 ORTHO05D007157 2.1e-101 372.9 247 72.5
Zm00001eb197940 Zea mays HOM05D005461 ORTHO05D007157 5.2e-100 368.2 247 71.3
DCAR_016328 Daucus carota HOM05D002313 ORTHO05D007157 9.7e-99 364.0 247 70.9
ATR0582G258 Amborella trichopoda HOM05D005461 ORTHO05D007157 1.3e-98 363.6 240 70.4
ClCG10G003620 Citrullus lanatus HOM05D005461 ORTHO05D007157 5.0e-95 351.7 262 66.8
CAN.G1008.42 Capsicum annuum HOM05D005461 ORTHO05D007157 4.0e-92 342.0 206 79.6
MD14G1144500 Malus domestica HOM05D005461 ORTHO05D007157 1.3e-90 337.0 274 62.0
Pp3c27_8370 Physcomitrium patens HOM05D005461 ORTHO05D007157 2.4e-89 332.8 250 66.4
VMungo0251G2939 Vigna mungo HOM05D005461 ORTHO05D007157 5.4e-89 331.6 217 71.0
SMO367G0238 Selaginella moellendorffii HOM05D005461 ORTHO05D007157 7.0e-89 331.3 244 65.2
Pp3c4_17250 Physcomitrium patens HOM05D005461 ORTHO05D007157 4.0e-84 315.5 248 64.9
Haze_05604 Corylus avellana HOM05D005461 ORTHO05D007157 7.7e-80 301.2 199 70.9
Haze_07079 Corylus avellana HOM05D005461 ORTHO05D007157 6.4e-74 281.6 211 64.9
Glyma.08G006333 Glycine max HOM05D005461 ORTHO05D007157 1.6e-72 276.9 185 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2736 Anthoceros agrestis HOM05D005461 ORTHO05D007157 2.0e-72 276.6 241 55.6
RcHm_v2.0_Chr7g0188311 Rosa chinensis HOM05D005461 ORTHO05D007157 3.3e-70 269.2 224 62.9
CSS0041831 Camellia sinensis var. sinensis HOM05D005461 ORTHO05D007157 5.8e-59 231.9 139 79.9
Sc04g0000020 Simmondsia chinensis HOM05D005461 ORTHO05D007157 1.4e-57 227.3 139 77.0
Sc04g0000060 Simmondsia chinensis HOM05D005461 ORTHO05D007157 1.4e-57 227.3 139 77.0
MD00G1076500 Malus domestica HOM05D005461 ORTHO05D007157 7.6e-43 178.3 216 46.3
Peaxi162Scf00550g00551 Petunia axillaris HOM05D000208 ORTHO05D000130 6.6e-39 165.2 148 60.1
Pp3c17_7850 Physcomitrium patens HOM05D005461 ORTHO05D007157 1.5e-38 164.1 153 54.2
Actinidia25502 Actinidia chinensis HOM05D003600 ORTHO05D004129 3.1e-20 103.2 148 43.9
HanXRQChr09g0252721 Helianthus annuus HOM05D005461 ORTHO05D007157 3.0e-15 86.7 48 83.3
CAN.G2368.1 Capsicum annuum HOM05D005461 ORTHO05D007157 3.4e-11 73.2 49 69.4


User provided reference genes

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