Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 2.8e-96 355.1 165 100.0
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 3.5e-94 348.2 165 97.6
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 1.6e-91 339.3 165 95.2
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 4.1e-87 324.7 165 90.9
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 6.5e-85 317.4 165 84.8
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 1.3e-80 303.1 165 81.8
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 1.7e-80 302.8 163 83.4
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 1.1e-79 300.1 165 82.4
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 1.4e-79 299.7 165 80.0
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 2.4e-79 298.9 163 82.2
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 4.1e-79 298.1 165 79.4
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 1.2e-78 296.6 165 80.0
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 2.0e-78 295.8 165 79.4
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 2.7e-78 295.4 165 80.6
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 2.7e-78 295.4 166 81.9
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 5.9e-78 294.3 163 81.6
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 1.3e-77 293.1 165 80.6
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.3e-77 293.1 165 80.6
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 1.3e-77 293.1 166 81.3
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 2.2e-77 292.4 165 80.0
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 2.2e-77 292.4 165 77.6
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 8.5e-77 290.4 144 91.7
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 1.1e-76 290.0 165 81.2
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 1.5e-76 289.7 163 76.7
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 3.2e-76 288.5 165 80.0
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 4.2e-76 288.1 162 79.6
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 5.5e-76 287.7 165 77.0
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 5.5e-76 287.7 163 78.5
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 9.4e-76 287.0 165 79.4
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 9.4e-76 287.0 164 75.6
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 78.2
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 2.1e-75 285.8 165 77.0
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 2.1e-75 285.8 165 77.6
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 3.6e-75 285.0 165 78.8
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 3.6e-75 285.0 161 76.4
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 4.7e-75 284.6 165 78.2
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 6.1e-75 284.3 161 80.7
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 79.4
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 77.6
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 76.4
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 77.6
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 2.3e-74 282.3 159 79.9
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 4.0e-74 281.6 163 79.1
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 4.0e-74 281.6 165 78.8
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 5.2e-74 281.2 163 77.3
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 5.2e-74 281.2 163 77.9
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 6.8e-74 280.8 165 77.0
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 75.2
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 75.2
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 75.2
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 2.0e-73 279.3 166 77.1
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 75.2
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 74.5
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 9.8e-73 276.9 165 74.5
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 9.8e-73 276.9 165 73.9
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 74.5
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 74.5
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 74.5
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 2.2e-72 275.8 165 75.2
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 2.8e-72 275.4 165 75.2
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 4.9e-72 274.6 165 75.8
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 4.9e-72 274.6 165 75.2
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 6.3e-72 274.2 165 75.2
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 1.8e-71 272.7 165 73.9
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 3.1e-71 271.9 166 75.3
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 3.1e-71 271.9 165 74.5
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 3.1e-71 271.9 166 74.7
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 4.1e-71 271.6 164 74.4
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 5.4e-71 271.2 165 73.3
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 1.6e-70 269.6 165 74.5
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 2.0e-70 269.2 165 75.8
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 4.5e-70 268.1 165 74.5
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 5.9e-70 267.7 163 74.2
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 1.0e-69 266.9 158 76.6
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 1.7e-69 266.2 165 75.2
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 2.9e-69 265.4 165 72.7
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 1.6e-67 259.6 165 73.3
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 8.0e-67 257.3 202 60.4
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 1.3e-64 250.0 162 68.5
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 5.9e-62 241.1 164 67.7
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 7.8e-62 240.7 161 68.3
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 2.5e-60 235.7 126 84.9
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 5.6e-60 234.6 165 66.7
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 5.2e-58 228.0 262 47.7
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 2.7e-54 215.7 117 83.8
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 1.1e-52 210.3 109 87.2
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 2.5e-52 209.1 141 66.0
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 7.3e-52 207.6 156 59.6
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 7.3e-52 207.6 154 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 1.2e-49 200.3 163 57.1
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 1.5e-49 199.9 153 60.1
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 2.2e-48 196.1 164 57.9
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 5.4e-39 164.9 91 78.0
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 3.0e-37 159.1 82 89.0
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 5.6e-36 154.8 84 82.1
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 1.1e-34 150.6 83 83.1
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 4.0e-34 148.7 83 75.9
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.7e-32 143.3 82 75.6
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 6.4e-32 141.4 91 68.1
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 1.1e-31 140.6 87 74.7
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 2.3e-29 132.9 82 69.5
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 1.5e-28 130.2 82 67.1
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 1.3e-27 127.1 82 64.6
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 2.1e-27 126.3 94 66.0
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 4.8e-19 98.6 71 67.6
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 2.8e-11 72.8 43 74.4


User provided reference genes

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