Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.8e-174 615.1 306 100.0
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.4e-170 602.8 306 98.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.0e-164 582.4 306 94.4
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 7.2e-130 467.6 314 76.8
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.1e-109 398.7 299 68.9
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 2.3e-107 392.9 246 77.6
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.1e-104 384.0 292 66.8
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.8e-104 381.3 299 66.9
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.9e-101 373.2 313 64.9
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.1e-100 369.8 315 63.8
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.7e-100 369.4 307 64.2
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.3e-99 367.1 303 65.0
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 8.1e-97 357.8 244 70.1
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 4.0e-96 355.5 221 76.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 4.0e-96 355.5 221 76.9
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.2e-95 354.0 274 65.0
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.6e-95 352.8 236 71.6
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 4.4e-95 352.1 227 74.9
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 3.2e-93 345.9 279 64.5
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.2e-93 345.9 292 61.0
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 7.1e-93 344.7 218 75.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 7.1e-93 344.7 235 72.8
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 9.2e-93 344.4 270 65.2
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.6e-92 342.0 263 65.0
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.6e-92 342.0 262 66.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.3e-91 340.5 212 78.3
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.3e-91 340.5 247 70.4
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.3e-91 339.7 226 75.2
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 3.0e-91 339.3 220 75.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 3.0e-91 339.3 220 75.0
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 5.1e-91 338.6 222 75.2
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 5.1e-91 338.6 232 72.0
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.7e-91 337.8 226 75.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.5e-90 337.0 228 71.5
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.5e-90 337.0 220 71.4
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.9e-90 336.7 215 75.8
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.9e-90 336.7 213 76.1
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 3.3e-90 335.9 247 68.0
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 3.3e-90 335.9 226 74.8
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.3e-90 335.9 226 74.8
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 3.3e-90 335.9 232 70.3
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.6e-90 335.1 250 66.8
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 7.3e-90 334.7 225 72.4
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.2e-89 334.0 216 73.1
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.6e-89 333.6 246 69.5
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.6e-89 333.6 262 65.6
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 1.6e-89 333.6 272 63.6
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.1e-89 333.2 220 73.6
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.8e-89 332.8 276 62.7
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.8e-89 332.8 211 76.3
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 2.8e-89 332.8 232 72.4
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 3.6e-89 332.4 212 76.4
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 3.6e-89 332.4 215 75.3
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.7e-89 332.0 247 67.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 8.1e-89 331.3 215 74.9
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.4e-88 330.5 211 75.4
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.8e-88 330.1 260 66.2
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.8e-88 330.1 270 62.6
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.8e-88 330.1 231 71.0
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.4e-88 329.7 214 73.8
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 3.1e-88 329.3 274 63.5
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 3.1e-88 329.3 211 77.3
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 5.3e-88 328.6 220 72.7
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 6.9e-88 328.2 261 63.6
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.2e-87 327.4 290 61.4
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.6e-87 326.2 230 70.4
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-87 325.9 255 65.5
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 3.4e-87 325.9 221 71.5
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 5.8e-87 325.1 212 73.1
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 9.9e-87 324.3 274 61.7
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.9e-87 324.3 250 68.0
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-86 323.9 255 63.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.2e-86 323.2 219 70.8
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.9e-86 322.8 212 72.6
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 2.9e-86 322.8 231 70.6
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.9e-86 322.8 259 64.1
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.9e-86 322.8 259 64.1
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 2.9e-86 322.8 220 71.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.8e-86 322.4 223 70.9
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.8e-86 322.4 235 68.1
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 4.9e-86 322.0 255 63.5
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.4e-86 321.6 216 73.1
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 8.4e-86 321.2 227 70.0
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.4e-86 321.2 212 73.6
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.4e-85 320.5 231 70.1
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-85 320.5 259 63.7
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.4e-85 320.5 212 73.1
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.4e-85 320.5 243 64.6
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.9e-85 320.1 235 67.7
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.4e-85 319.7 227 69.2
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 4.2e-85 318.9 223 69.1
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 4.2e-85 318.9 213 73.2
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 5.4e-85 318.5 216 73.1
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 5.4e-85 318.5 212 73.6
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 5.4e-85 318.5 250 66.0
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 5.4e-85 318.5 212 73.6
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 5.4e-85 318.5 212 73.6
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 5.4e-85 318.5 250 66.0
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 7.1e-85 318.2 249 67.5
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.2e-84 317.4 220 70.5
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 1.6e-84 317.0 221 69.7
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.5e-84 315.8 221 70.6
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 3.5e-84 315.8 241 63.1
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 6.0e-84 315.1 215 71.6
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.0e-83 314.3 261 60.5
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.0e-83 314.3 216 70.8
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.0e-83 314.3 241 63.1
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.3e-83 313.2 213 71.8
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 3.0e-83 312.8 222 69.4
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.1e-83 312.0 216 70.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.9e-82 310.1 245 64.1
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.3e-82 308.9 245 64.5
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 1.6e-81 307.0 213 69.5
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 3.6e-81 305.8 229 68.1
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 8.1e-81 304.7 229 67.7
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 8.1e-81 304.7 229 67.7
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-80 304.3 248 65.3
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 5.3e-80 302.0 207 71.5
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 6.9e-80 301.6 203 71.9
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.2e-79 300.8 207 72.0
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 2.6e-79 299.7 207 71.0
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 9.9e-79 297.7 208 71.6
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.9e-79 297.7 210 68.6
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-78 297.4 229 66.8
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.3e-78 297.4 233 65.7
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 2.2e-78 296.6 207 70.5
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.4e-78 294.7 242 62.0
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 8.4e-78 294.7 210 68.1
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.4e-77 293.9 180 78.3
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.2e-76 290.8 217 65.0
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.6e-76 290.4 243 61.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.3e-75 287.3 212 67.0
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 3.9e-75 285.8 175 76.6
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-73 280.8 224 61.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-73 280.8 224 61.2
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-73 280.8 224 61.2
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 4.8e-73 278.9 224 60.7
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 4.8e-73 278.9 224 60.7
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 4.8e-73 278.9 224 60.7
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 3.4e-71 272.7 244 57.0
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.9e-69 266.9 174 73.6
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.3e-67 260.0 221 60.6
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 6.7e-67 258.5 213 60.6
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 2.0e-63 246.9 293 49.5
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.9e-61 240.4 221 54.8
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.3e-59 234.2 230 57.4
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.3e-57 227.6 282 50.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.8e-56 223.8 224 53.1
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.8e-56 223.8 143 76.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 5.3e-56 222.2 143 76.2
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 2.0e-55 220.3 244 48.4
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 7.7e-55 218.4 133 78.9
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 4.3e-50 202.6 228 47.8
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.4e-50 201.8 252 43.7
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.1e-45 188.0 107 83.2
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.0e-43 181.4 204 51.5
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.3e-40 169.1 160 48.8
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 5.9e-39 165.6 143 55.9
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.8e-27 125.6 78 74.4
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 7.2e-21 105.5 75 66.7
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.6e-15 87.8 89 49.4
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.9e-14 83.6 75 57.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 3.8e-14 83.2 66 60.6
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 7.2e-13 79.0 82 46.3
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 2.2e-09 67.4 45 73.3
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 7.0e-08 62.4 81 46.9
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.7e-06 57.8 40 65.0


User provided reference genes

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