Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g068110.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.3e-64 249.6 125 100.0
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 2.7e-22 109.0 126 53.2
PGSC0003DMG400028537 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.5e-20 103.2 62 83.9
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.6e-19 98.6 139 48.2
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 8.0e-19 97.4 139 47.5
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 1.4e-18 96.7 140 47.9
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 2.3e-18 95.9 136 45.6
CAN.G1503.1 Capsicum annuum HOM05D000091 ORTHO05D003679 8.9e-18 94.0 110 54.5
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 8.9e-18 94.0 140 46.4
PGSC0003DMG400028538 Solanum tuberosum HOM05D002758 ORTHO05D002885 2.0e-17 92.8 96 60.4
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 4.4e-17 91.7 128 51.6
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 5.8e-17 91.3 127 48.0
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.1e-15 87.0 139 44.6
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 9.2e-15 84.0 131 42.0
SGA_v2.0_scaffold5G02683 Striga asiatica HOM05D002758 ORTHO05D002885 3.5e-14 82.0 136 45.6
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 2.3e-13 79.3 141 41.8
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 3.0e-13 79.0 136 42.6
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 3.0e-13 79.0 125 44.8
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 3.9e-13 78.6 136 39.7
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 5.1e-13 78.2 135 41.5
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 5.1e-13 78.2 138 42.8
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 1.1e-12 77.0 126 40.5
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.5e-12 76.6 132 40.2
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 1.5e-12 76.6 132 41.7
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 2.5e-12 75.9 138 38.4
Solyc06g068100.1 Solanum lycopersicum HOM05D002758 ORTHO05D002885 4.3e-12 75.1 99 53.5
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 5.6e-12 74.7 134 41.0
SGA_v2.0_scaffold37G14775 Striga asiatica HOM05D002758 ORTHO05D002885 5.6e-12 74.7 144 42.4
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 7.3e-12 74.3 128 40.6
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 9.5e-12 73.9 130 42.3
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 9.5e-12 73.9 122 41.0
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 9.5e-12 73.9 136 39.7
Phvul.003G165200 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.2e-11 73.6 126 39.7
arahy.Tifrunner.gnm1.ann1.75SBZZ Arachis hypogaea HOM05D002758 ORTHO05D002885 2.1e-11 72.8 136 41.9
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.1e-11 72.8 127 42.5
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 2.1e-11 72.8 135 43.0
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 2.8e-11 72.4 137 42.3
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 2.8e-11 72.4 137 39.4
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 4.7e-11 71.6 145 37.9
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 6.2e-11 71.2 145 39.3
arahy.Tifrunner.gnm1.ann1.4I3R3X Arachis hypogaea HOM05D002758 ORTHO05D002885 8.1e-11 70.9 137 41.6
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 8.1e-11 70.9 126 40.5
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 8.1e-11 70.9 145 37.9
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.8e-10 69.7 136 37.5
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 1.8e-10 69.7 144 41.7
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.8e-10 69.7 140 40.0
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 2.3e-10 69.3 144 37.5
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 2.3e-10 69.3 144 37.5
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 2.3e-10 69.3 126 42.1
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 3.1e-10 68.9 141 39.7
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 3.1e-10 68.9 129 38.0
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 4.0e-10 68.6 148 35.8
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 6.8e-10 67.8 133 36.1
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 8.9e-10 67.4 121 38.8
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 8.9e-10 67.4 106 41.5
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 1.2e-09 67.0 142 37.3
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 1.2e-09 67.0 131 35.9
Sc08g0006550 Simmondsia chinensis HOM05D002758 ORTHO05D002885 1.2e-09 67.0 121 40.5
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 1.5e-09 66.6 141 36.9
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 1.5e-09 66.6 144 34.0
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 1.5e-09 66.6 138 38.4
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.0e-09 66.2 127 40.2
Sabra06G0051500 Salix brachista HOM05D002758 ORTHO05D002885 2.0e-09 66.2 139 36.0
CANSAT11G2365 Cannabis sativa HOM05D002758 ORTHO05D002885 2.6e-09 65.9 148 35.1
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.6e-09 65.9 137 37.2
Lj4g0007884 Lotus japonicus HOM05D002758 ORTHO05D002885 2.6e-09 65.9 133 38.3
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.6e-09 65.9 121 39.7
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 3.4e-09 65.5 122 41.0
Glyma.13G166500 Glycine max HOM05D002758 ORTHO05D002885 4.4e-09 65.1 140 36.4
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 4.4e-09 65.1 137 37.2
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 5.8e-09 64.7 131 33.6
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 5.8e-09 64.7 131 33.6
MD02G1030600 Malus domestica HOM05D002758 ORTHO05D002885 5.8e-09 64.7 146 39.7
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 9.9e-09 63.9 139 35.3
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 1.3e-08 63.5 135 36.3
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 1.3e-08 63.5 136 36.8
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 1.7e-08 63.2 133 39.8
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 1.7e-08 63.2 143 37.1
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 1.7e-08 63.2 139 38.1
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 2.2e-08 62.8 126 35.7
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 3.7e-08 62.0 143 37.1
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 3.7e-08 62.0 143 37.1
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 3.7e-08 62.0 143 37.1
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 3.7e-08 62.0 118 35.6
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 4.9e-08 61.6 142 36.6
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 4.9e-08 61.6 138 34.8
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 4.9e-08 61.6 129 37.2
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 6.4e-08 61.2 142 37.3
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 6.4e-08 61.2 132 37.1
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.4e-08 61.2 137 35.8
Eucgr.C01181 Eucalyptus grandis HOM05D002758 ORTHO05D002885 1.1e-07 60.5 136 36.0
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 1.1e-07 60.5 146 34.2
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 1.1e-07 60.5 142 34.5
Aqoxy7G02215 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 1.4e-07 60.1 123 37.4
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 1.4e-07 60.1 140 34.3
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 1.4e-07 60.1 126 35.7
Oeu045136.1 Olea europaea HOM05D002758 ORTHO05D002885 1.4e-07 60.1 115 40.0
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 1.4e-07 60.1 130 36.9
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.9e-07 59.7 140 35.0
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.9e-07 59.7 140 35.0
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.9e-07 59.7 140 35.0
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 1.9e-07 59.7 132 37.1
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 1.9e-07 59.7 139 35.3
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 2.4e-07 59.3 133 37.6
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.4e-07 59.3 132 33.3
Sed0016169 Sechium edule HOM05D002758 ORTHO05D002885 2.4e-07 59.3 143 34.3
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.2e-07 58.9 129 35.7
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 4.1e-07 58.5 138 34.8
Cc06_g08410 Coffea canephora HOM05D002758 ORTHO05D002885 4.1e-07 58.5 158 33.5
DCAR_014886 Daucus carota HOM05D002758 ORTHO05D002885 4.1e-07 58.5 129 40.3
CiPaw.03G244800 Carya illinoinensis HOM05D002758 ORTHO05D002885 5.4e-07 58.2 144 33.3
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 7.1e-07 57.8 143 32.9
TPR.G26478 Trifolium pratense HOM05D002758 ORTHO05D002885 7.1e-07 57.8 149 34.2
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.2e-07 57.4 130 36.2
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 9.2e-07 57.4 138 35.5
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 9.2e-07 57.4 126 38.1
Sed0025517 Sechium edule HOM05D002758 ORTHO05D002885 1.2e-06 57.0 127 36.2
Cpa.g.sc46.5 Carica papaya HOM05D002758 ORTHO05D002885 1.6e-06 56.6 172 30.8
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 1.6e-06 56.6 140 34.3
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 2.1e-06 56.2 133 35.3
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 2.1e-06 56.2 132 33.3
QL02p088621 Quercus lobata HOM05D002758 ORTHO05D002885 2.1e-06 56.2 139 34.5
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.1e-06 56.2 136 34.6
Solyc07g008280.4 Solanum lycopersicum HOM05D002758 ORTHO05D002885 2.1e-06 56.2 140 33.6
CiPaw.04G171600 Carya illinoinensis HOM05D002758 ORTHO05D002885 2.7e-06 55.8 131 35.1
Sed0027515 Sechium edule HOM05D002758 ORTHO05D002885 2.7e-06 55.8 126 37.3
Sopen07g004170 Solanum pennellii HOM05D002758 ORTHO05D002885 2.7e-06 55.8 140 33.6
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 2.7e-06 55.8 138 32.6
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 3.5e-06 55.5 141 33.3
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 3.5e-06 55.5 136 31.6
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 4.6e-06 55.1 137 35.8
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 6.0e-06 54.7 133 34.6
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 6.0e-06 54.7 137 32.8
DCAR_020919 Daucus carota HOM05D002758 ORTHO05D002885 6.0e-06 54.7 121 38.8
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 6.0e-06 54.7 142 35.2
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 6.0e-06 54.7 141 33.3
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 7.8e-06 54.3 138 34.1
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 7.8e-06 54.3 144 34.7
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 7.8e-06 54.3 136 35.3


User provided reference genes

Program Settings