Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 2.5e-80 302.0 144 100.0
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 2.3e-70 268.9 128 99.2
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 2.6e-69 265.4 128 97.7
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 4.5e-58 228.0 132 85.6
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 6.6e-49 197.6 132 73.5
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.2e-47 193.4 133 70.7
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 4.6e-42 174.9 120 68.3
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.7e-33 146.4 129 53.5
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 6.6e-33 144.4 126 53.2
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 3.6e-31 138.7 128 53.1
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 8.1e-31 137.5 121 54.5
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.8e-30 136.3 122 54.9
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 4.0e-30 135.2 129 50.4
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 6.4e-28 127.9 124 54.0
Peaxi162Scf00207g00940 Petunia axillaris HOM05D005672 ORTHO05D003038 6.4e-28 127.9 129 56.6
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 4.1e-27 125.2 112 50.0
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 4.1e-27 125.2 127 45.7
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 3.5e-26 122.1 125 44.0
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.0e-25 120.6 124 51.6
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 3.9e-25 118.6 124 50.8
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 1.9e-24 116.3 124 46.0
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.6e-24 114.8 130 44.6
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 2.8e-23 112.5 108 47.2
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.6e-23 112.1 127 44.1
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 7.6e-21 104.4 121 47.1
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 7.6e-21 104.4 133 45.1
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 8.4e-20 100.9 126 41.3
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 1.1e-19 100.5 132 38.6
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 9.3e-19 97.4 128 40.6
SGA_v2.0_scaffold5G02600 Striga asiatica HOM05D005672 ORTHO05D003038 6.0e-18 94.7 96 51.0
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 7.8e-18 94.4 129 39.5
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.0e-17 94.0 123 42.3
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 1.3e-17 93.6 115 45.2
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.3e-17 92.8 122 39.3
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 3.0e-17 92.4 108 44.4
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 5.1e-17 91.7 123 42.3
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 6.6e-17 91.3 130 39.2
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 8.7e-17 90.9 120 43.3
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 5.6e-16 88.2 122 38.5
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 7.3e-16 87.8 120 39.2
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 1.3e-15 87.0 107 38.3
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 1.6e-15 86.7 103 44.7
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 6.2e-15 84.7 115 40.0
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 8.1e-15 84.3 116 38.8
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 1.8e-14 83.2 122 34.4
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 1.8e-14 83.2 122 34.4
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 1.8e-14 83.2 122 34.4
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 1.8e-14 83.2 121 35.5
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 2.4e-14 82.8 121 35.5
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 6.9e-14 81.3 118 39.8
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 6.9e-14 81.3 116 37.9
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 9.0e-14 80.9 118 39.8
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.2e-13 80.5 112 37.5
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 3.4e-13 79.0 116 37.1
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 4.5e-13 78.6 118 33.1
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 4.5e-13 78.6 119 35.3
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.8e-13 78.2 118 33.1
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.3e-12 77.0 116 35.3
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 2.2e-12 76.3 123 35.0
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 2.2e-12 76.3 127 35.4
PGSC0003DMG400002652 Solanum tuberosum HOM05D005672 ORTHO05D003038 2.2e-12 76.3 105 43.8
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 2.9e-12 75.9 118 35.6
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 3.8e-12 75.5 127 32.3
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 3.8e-12 75.5 110 39.1
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 4.9e-12 75.1 114 35.1
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 6.4e-12 74.7 77 46.8
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-11 73.9 126 32.5
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 1.4e-11 73.6 118 36.4
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.2e-11 72.0 124 33.1
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 4.2e-11 72.0 118 33.1
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 5.4e-11 71.6 125 33.6
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 7.1e-11 71.2 116 36.2
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 7.1e-11 71.2 108 37.0
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 9.3e-11 70.9 107 42.1
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 9.3e-11 70.9 120 35.0
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-10 70.1 122 37.7
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 2.1e-10 69.7 121 37.2
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 3.5e-10 68.9 119 31.9
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 3.5e-10 68.9 124 33.9
PSO791G0001 Papaver somniferum HOM05D048766 ORTHO05D003038 4.6e-10 68.6 130 32.3
PSO832G3804 Papaver somniferum HOM05D048766 ORTHO05D003038 4.6e-10 68.6 130 32.3
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 6.0e-10 68.2 117 34.2
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 6.0e-10 68.2 109 32.1
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 6.0e-10 68.2 128 32.8
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 7.9e-10 67.8 126 31.0
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 7.9e-10 67.8 117 35.0
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-09 67.0 122 36.1
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.8e-09 66.6 126 30.2
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 2.3e-09 66.2 122 36.1
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.3e-09 66.2 96 33.3
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 3.0e-09 65.9 121 36.4
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 3.0e-09 65.9 121 36.4
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.9e-09 65.5 120 35.8
Nitab4.5_0000671g0010 Nicotiana tabacum HOM05D005672 ORTHO05D003038 3.9e-09 65.5 62 53.2
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 5.1e-09 65.1 96 34.4
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.1e-09 65.1 126 29.4
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.7e-09 64.7 99 37.4
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 1.1e-08 63.9 114 37.7
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.5e-08 63.5 118 29.7
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.5e-08 63.5 122 32.8
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.5e-08 63.5 121 33.9
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 2.5e-08 62.8 120 33.3
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 2.5e-08 62.8 93 33.3
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 2.5e-08 62.8 122 32.8
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.3e-08 62.4 118 39.0
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 4.3e-08 62.0 123 31.7
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 5.6e-08 61.6 123 34.1
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 5.6e-08 61.6 123 34.1
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.3e-07 60.5 85 38.8
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.3e-07 60.5 121 29.8
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.3e-07 60.5 121 29.8
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.6e-07 60.1 117 30.8
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 1.6e-07 60.1 121 28.9
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 2.1e-07 59.7 121 29.8
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.1e-07 59.7 86 37.2
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 4.8e-07 58.5 114 35.1
Aqoxy4G01164 Aquilegia oxysepala HOM05D007540 ORTHO05D009531 8.1e-07 57.8 93 34.4
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 8.1e-07 57.8 111 35.1
Sed0004804 Sechium edule HOM05D005672 ORTHO05D003038 8.1e-07 57.8 106 33.0
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-06 57.4 115 33.9
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-06 57.0 114 35.1
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.1e-06 55.8 118 32.2
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 4.0e-06 55.5 114 34.2
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.0e-06 55.5 121 32.2
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 4.0e-06 55.5 121 31.4
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 5.3e-06 55.1 84 39.3
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.9e-06 54.7 128 25.8
Carub.0001s2384 Capsella rubella HOM05D007540 ORTHO05D009531 9.0e-06 54.3 108 35.2


User provided reference genes

Program Settings