Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g066460.3 Solanum lycopersicum HOM05D000949 ORTHO05D390274 2.3e-148 528.9 270 100.0
Sopen06g024740 Solanum pennellii HOM05D000949 ORTHO05D001276 3.4e-115 418.7 228 94.3
CAN.G1124.1 Capsicum annuum HOM05D000949 ORTHO05D001276 1.2e-91 340.5 255 72.9
Nitab4.5_0001991g0020 Nicotiana tabacum HOM05D000949 ORTHO05D001276 1.0e-87 327.4 258 69.8
Nitab4.5_0000300g0210 Nicotiana tabacum HOM05D000949 ORTHO05D001276 1.8e-79 300.1 258 65.9
Peaxi162Scf00207g01241 Petunia axillaris HOM05D000949 ORTHO05D001276 4.7e-72 275.4 259 61.8
Cc04_g02490 Coffea canephora HOM05D000949 ORTHO05D001276 3.0e-26 123.2 264 36.7
Dinv30431 Davidia involucrata HOM05D000949 ORTHO05D001276 5.6e-25 119.0 278 36.7
Manes.11G032900 Manihot esculenta HOM05D000949 ORTHO05D001276 1.3e-18 97.8 257 34.2
Manes.04G134800 Manihot esculenta HOM05D000949 ORTHO05D001276 2.0e-14 84.0 241 31.5
Hma1.2p1_0430F.1_g151330 Hydrangea macrophylla HOM05D000949 ORTHO05D001276 2.6e-14 83.6 232 36.6
Haze_15855 Corylus avellana HOM05D000949 ORTHO05D001276 3.4e-14 83.2 287 30.7
Lj9A514T52 Lonicera japonica HOM05D000949 ORTHO05D001276 4.4e-14 82.8 243 34.2
Rhsim11G0049600 Rhododendron simsii HOM05D000949 ORTHO05D001276 5.8e-14 82.4 267 30.0
SalBow2G2248 Salvia bowleyana HOM05D000949 ORTHO05D001276 9.9e-14 81.6 267 33.0
GSVIVG01016969001 Vitis vinifera HOM05D000949 ORTHO05D001276 3.7e-13 79.7 259 30.9
Dinv37971 Davidia involucrata HOM05D000949 ORTHO05D001276 6.4e-13 79.0 106 45.3
Oeu002530.1 Olea europaea HOM05D000949 ORTHO05D001276 4.1e-12 76.3 264 32.6
Oeu002531.3 Olea europaea HOM05D000949 ORTHO05D001276 4.1e-12 76.3 264 32.6
Prupe.3G057700 Prunus persica HOM05D000949 ORTHO05D001276 5.4e-12 75.9 260 29.6
ClCG09G000240 Citrullus lanatus HOM05D000949 ORTHO05D001276 9.2e-12 75.1 291 27.8
CSS0040355 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D001276 2.7e-11 73.6 254 32.3
CSS0045428 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D001276 4.6e-11 72.8 214 32.2
CSS0001132 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D001276 6.0e-11 72.4 254 31.9
Actinidia39133 Actinidia chinensis HOM05D000949 ORTHO05D001276 1.0e-10 71.6 264 30.3
Cpa.g.sc25.22 Carica papaya HOM05D000949 ORTHO05D001276 2.3e-10 70.5 265 29.4
Cfa003639 Carpinus fangiana HOM05D000949 ORTHO05D001276 6.6e-10 68.9 255 29.4
Oeu024261.1 Olea europaea HOM05D000949 ORTHO05D001276 8.6e-10 68.6 290 27.6
COL.COLO4_30523 Corchorus olitorius HOM05D000949 ORTHO05D001276 1.1e-09 68.2 281 27.8
Gohir.A07G022233 Gossypium hirsutum HOM05D000949 ORTHO05D001276 1.5e-09 67.8 96 42.7
Glyma.06G088500 Glycine max HOM05D000949 ORTHO05D001276 1.9e-09 67.4 127 35.4
TAR624G1138 Trochodendron aralioides HOM05D000949 ORTHO05D001276 1.9e-09 67.4 97 44.3
Atru.chr1.3543 Acer truncatum HOM05D000949 ORTHO05D001276 2.5e-09 67.0 268 31.3
Aqoxy7G01392 Aquilegia oxysepala HOM05D000949 ORTHO05D001276 2.5e-09 67.0 261 30.3
Gohir.D07G024800 Gossypium hirsutum HOM05D000949 ORTHO05D001276 4.3e-09 66.2 97 44.3
Gorai.001G025900 Gossypium raimondii HOM05D000949 ORTHO05D001276 4.3e-09 66.2 97 44.3
SGA_v2.0_scaffold265G46066 Striga asiatica HOM05D000949 ORTHO05D001276 4.3e-09 66.2 260 30.8
QL05p019739 Quercus lobata HOM05D000949 ORTHO05D001276 5.6e-09 65.9 291 29.6
Ciclev10025039m.g Citrus clementina HOM05D000949 ORTHO05D001276 7.3e-09 65.5 262 29.8
CsaV3_7G035250 Cucumis sativus L. HOM05D000949 ORTHO05D001276 7.3e-09 65.5 280 29.3
Actinidia21719 Actinidia chinensis HOM05D000949 ORTHO05D001276 1.2e-08 64.7 92 45.7
CSS0032383 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D001276 1.2e-08 64.7 273 28.9
DCAR_026355 Daucus carota HOM05D000949 ORTHO05D001276 1.6e-08 64.3 216 31.0
Lalb_Chr08g0242901 Lupinus albus HOM05D000949 ORTHO05D001276 1.6e-08 64.3 177 33.3
PGR102G0512 Punica granatum HOM05D000949 ORTHO05D001276 1.6e-08 64.3 116 33.6
QL12p040925 Quercus lobata HOM05D000949 ORTHO05D001276 1.6e-08 64.3 127 40.9
vmacro00183 Vaccinium macrocarpon HOM05D000949 ORTHO05D001276 1.6e-08 64.3 293 27.6
Rhsim12G0203400 Rhododendron simsii HOM05D000949 ORTHO05D001276 2.8e-08 63.5 230 31.7
Sed0010067 Sechium edule HOM05D000949 ORTHO05D001276 2.8e-08 63.5 269 26.4
VMungo1309G1610 Vigna mungo HOM05D000949 ORTHO05D001276 2.8e-08 63.5 109 38.5
A04p20050 Brassica napus HOM05D000949 ORTHO05D001276 3.6e-08 63.2 89 40.4
BraA04t17587Z Brassica rapa HOM05D000949 ORTHO05D001276 3.6e-08 63.2 89 40.4
Phvul.009G112300 Phaseolus vulgaris HOM05D000949 ORTHO05D001276 3.6e-08 63.2 110 42.7
Psat5g018400 Pisum sativum HOM05D000949 ORTHO05D001276 3.6e-08 63.2 97 38.1
Thecc.09G048200 Theobroma cacao HOM05D000949 ORTHO05D001276 3.6e-08 63.2 96 42.7
TPR.G12503 Trifolium pratense HOM05D000949 ORTHO05D001276 3.6e-08 63.2 123 34.1
Ca_15568_v3 Cicer arietinum L. HOM05D000949 ORTHO05D001276 4.7e-08 62.8 98 40.8
Lalb_Chr23g0269731 Lupinus albus HOM05D000949 ORTHO05D001276 4.7e-08 62.8 123 35.8
Nn8g39051 Nelumbo nucifera HOM05D000949 ORTHO05D001276 4.7e-08 62.8 97 44.3
Actinidia09008 Actinidia chinensis HOM05D000949 ORTHO05D001276 6.2e-08 62.4 92 42.4
Peaxi162Scf00699g00521 Petunia axillaris HOM05D000949 ORTHO05D001276 6.2e-08 62.4 114 36.8
Duzib168G0685 Durio zibethinus HOM05D000949 ORTHO05D001276 8.1e-08 62.0 131 35.1
Duzib187G1119 Durio zibethinus HOM05D000949 ORTHO05D001276 8.1e-08 62.0 88 44.3
arahy.Tifrunner.gnm1.ann1.ZZJI2X Arachis hypogaea HOM05D000949 ORTHO05D001276 1.4e-07 61.2 155 31.6
Nitab4.5_0000318g0150 Nicotiana tabacum HOM05D000949 ORTHO05D001276 1.4e-07 61.2 310 26.8
CSS0047224 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D001276 2.4e-07 60.5 164 31.1
CSS0049439 Camellia sinensis var. sinensis HOM05D000949 ORTHO05D001276 2.4e-07 60.5 164 31.1
MELO3C024435.2 Cucumis melo HOM05D000949 ORTHO05D001276 3.1e-07 60.1 292 27.1
Hma1.2p1_0154F.1_g068030 Hydrangea macrophylla HOM05D000949 ORTHO05D001276 3.1e-07 60.1 274 28.5
Medtr3g110375 Medicago truncatula HOM05D000949 ORTHO05D001276 3.1e-07 60.1 123 33.3
Solyc08g066200.3 Solanum lycopersicum HOM05D000949 ORTHO05D001276 3.1e-07 60.1 86 44.2
Sopen08g019880 Solanum pennellii HOM05D000949 ORTHO05D001276 3.1e-07 60.1 86 44.2
COL.COLO4_21002 Corchorus olitorius HOM05D000949 ORTHO05D001276 4.0e-07 59.7 143 34.3
MD09G1202100 Malus domestica HOM05D000949 ORTHO05D001276 4.0e-07 59.7 251 31.9
Thecc.06G100800 Theobroma cacao HOM05D000949 ORTHO05D001276 4.0e-07 59.7 256 30.9
Ca_23276_v3 Cicer arietinum L. HOM05D000949 ORTHO05D001276 6.8e-07 58.9 262 29.8
Glyma.04G086800 Glycine max HOM05D000949 ORTHO05D001276 6.8e-07 58.9 125 34.4
C04p55730 Brassica napus HOM05D000949 ORTHO05D001276 2.0e-06 57.4 89 38.2
RcHm_v2.0_Chr2g0140721 Rosa chinensis HOM05D000949 ORTHO05D001276 2.0e-06 57.4 258 29.5
FAN27G1756 Fragaria x ananassa HOM05D000949 ORTHO05D001276 2.6e-06 57.0 113 38.1
Lj3g0003693 Lotus japonicus HOM05D000949 ORTHO05D001276 2.6e-06 57.0 261 29.1
MBI01_g10121_MAGBIO Magnolia biondii HOM05D000949 ORTHO05D001276 2.6e-06 57.0 86 41.9
CAN.G20.14 Capsicum annuum HOM05D000949 ORTHO05D001276 4.4e-06 56.2 86 44.2
Potri.006G235400 Populus trichocarpa HOM05D000949 ORTHO05D001276 4.4e-06 56.2 120 33.3
Haze_21924 Corylus avellana HOM05D000949 ORTHO05D001276 5.8e-06 55.8 103 35.9
TWI75G0564 Tripterygium wilfordii HOM05D000949 ORTHO05D001276 5.8e-06 55.8 246 27.2
PSO210G1779 Papaver somniferum HOM05D000949 ORTHO05D001276 7.6e-06 55.5 88 42.0
MELO3C011126.2 Cucumis melo HOM05D000949 ORTHO05D001276 9.9e-06 55.1 103 34.0
Lj1g0014753 Lotus japonicus HOM05D000949 ORTHO05D001276 9.9e-06 55.1 146 32.2
Nitab4.5_0005618g0020 Nicotiana tabacum HOM05D000949 ORTHO05D001276 9.9e-06 55.1 311 25.7
Sed0013768 Sechium edule HOM05D000949 ORTHO05D001276 9.9e-06 55.1 246 26.8


User provided reference genes

Program Settings