Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 5.0e-88 328.2 224 100.0
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 5.0e-88 328.2 224 100.0
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 1.9e-87 326.2 224 99.6
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 4.7e-86 321.6 224 96.9
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 1.5e-84 316.6 224 96.4
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.2e-78 297.0 224 92.9
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 1.4e-77 293.5 224 90.2
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 7.6e-60 234.6 214 82.7
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 7.8e-57 224.6 220 75.9
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.0e-56 224.2 221 75.6
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 1.3e-56 223.8 221 74.2
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 3.3e-55 219.2 222 69.8
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 3.1e-53 212.6 221 69.7
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 5.2e-53 211.8 222 72.1
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 2.0e-52 209.9 225 72.0
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 7.6e-52 208.0 226 73.0
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.7e-51 206.8 225 71.6
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 2.9e-51 206.1 218 64.2
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 3.8e-51 205.7 222 68.9
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.2e-50 202.6 156 94.2
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 4.2e-50 202.2 223 69.1
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 4.6e-49 198.7 222 69.8
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 4.6e-49 198.7 221 70.6
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 1.3e-48 197.2 226 62.4
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 2.3e-48 196.4 221 69.7
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 6.6e-48 194.9 226 69.0
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 6.6e-48 194.9 221 64.7
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 6.6e-48 194.9 222 68.5
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 8.7e-48 194.5 222 69.4
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.1e-47 194.1 222 67.6
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 3.3e-47 192.6 222 68.9
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 4.3e-47 192.2 223 64.1
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 4.3e-47 192.2 221 69.2
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 5.6e-47 191.8 220 65.9
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 1.3e-46 190.7 223 68.6
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 2.1e-46 189.9 223 65.5
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 2.8e-46 189.5 221 67.9
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 4.8e-46 188.7 222 65.8
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 6.2e-46 188.3 220 66.4
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 1.4e-45 187.2 227 64.3
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 2.4e-45 186.4 223 67.7
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 3.1e-45 186.0 225 68.0
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 4.0e-45 185.7 222 69.8
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 4.0e-45 185.7 226 68.1
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 5.3e-45 185.3 225 68.0
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 9.0e-45 184.5 225 67.1
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 9.0e-45 184.5 229 61.1
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 9.0e-45 184.5 220 65.9
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 1.5e-44 183.7 227 61.2
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 1.5e-44 183.7 225 67.1
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 3.4e-44 182.6 226 63.3
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 4.4e-44 182.2 226 65.0
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 5.8e-44 181.8 225 66.2
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 9.9e-44 181.0 225 62.2
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 1.7e-43 180.3 223 66.4
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 6.4e-43 178.3 222 67.6
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 6.4e-43 178.3 222 65.8
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 8.4e-43 177.9 224 65.6
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.4e-42 177.2 225 66.2
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 2.4e-42 176.4 160 77.5
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 1.2e-41 174.1 226 63.3
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.6e-41 173.7 222 62.2
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 2.7e-41 172.9 230 63.0
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 4.6e-41 172.2 222 66.7
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 7.9e-41 171.4 222 66.2
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 1.3e-40 170.6 225 64.0
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 3.9e-40 169.1 225 63.6
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 3.9e-40 169.1 221 62.4
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 6.6e-40 168.3 169 63.3
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 6.6e-40 168.3 226 63.7
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 1.1e-39 167.5 221 63.8
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 2.5e-39 166.4 219 66.2
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 2.5e-39 166.4 225 60.9
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 5.6e-39 165.2 222 64.4
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 2.8e-38 162.9 223 57.8
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 4.8e-38 162.2 174 60.3
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 2.4e-37 159.8 221 65.6
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 4.0e-37 159.1 225 61.8
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 9.0e-37 157.9 167 76.0
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 5.8e-36 155.2 144 61.8
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 2.9e-35 152.9 221 48.9
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.1e-34 151.0 126 94.4
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 2.4e-34 149.8 157 68.8
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 9.3e-34 147.9 213 60.1
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 9.3e-34 147.9 225 53.3
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 2.3e-32 143.3 218 56.0
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 5.1e-32 142.1 227 60.4
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 1.6e-30 137.1 160 68.8
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 3.7e-30 136.0 128 72.7
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 7.1e-26 121.7 223 53.4
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 9.3e-26 121.3 166 65.1
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 1.2e-25 120.9 149 71.1
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.1e-25 120.2 109 95.4
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 2.3e-24 116.7 76 82.9
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 3.7e-22 109.4 106 81.1
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 4.8e-22 109.0 146 66.4
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 2.4e-21 106.7 158 51.3
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 4.1e-21 105.9 106 82.1
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 4.1e-21 105.9 106 73.6
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 1.5e-20 104.0 105 60.0
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 7.6e-20 101.7 179 55.3
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 5.0e-19 99.0 105 54.3
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 8.5e-19 98.2 179 54.2
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 9.3e-18 94.7 217 47.5
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.7e-17 93.2 163 36.8
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 5.7e-15 85.5 113 49.6
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 3.7e-14 82.8 91 49.5
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 2.4e-13 80.1 60 70.0
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 3.1e-13 79.7 85 45.9
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 3.6e-09 66.2 106 42.5
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 1.3e-06 57.8 83 44.6
ATR0743G144 Amborella trichopoda HOM05D007100 ORTHO05D008958 6.3e-06 55.5 101 43.6


User provided reference genes

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