Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.3e-113 411.8 215 100.0
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 6.9e-103 377.5 198 98.5
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.6e-89 332.4 198 86.9
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 6.8e-74 281.2 182 79.1
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.5e-73 280.0 195 75.9
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.8e-72 275.8 200 73.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-70 269.6 215 68.8
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.7e-70 269.2 193 75.6
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 7.7e-70 267.7 200 71.5
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 7.7e-70 267.7 199 72.4
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 5.0e-69 265.0 198 71.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.1e-68 263.8 195 72.3
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 9.4e-68 260.8 192 72.4
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-67 260.4 171 81.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.1e-67 259.6 192 71.9
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.7e-67 259.2 201 70.6
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.7e-67 259.2 201 70.6
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.7e-67 258.5 193 72.0
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.1e-67 258.1 204 70.1
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.0e-66 257.3 196 73.0
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.0e-66 257.3 192 69.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.4e-66 256.9 196 72.4
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.4e-66 256.9 198 69.2
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.8e-66 256.5 198 69.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.8e-66 256.5 200 68.5
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.3e-66 256.1 203 67.0
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 2.3e-66 256.1 198 68.7
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 5.2e-66 255.0 210 66.2
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 8.8e-66 254.2 180 74.4
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.4e-65 252.3 211 65.4
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 4.4e-65 251.9 204 67.2
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.7e-65 251.5 205 66.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 7.5e-65 251.1 204 65.7
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 7.5e-65 251.1 210 64.8
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.5e-65 251.1 204 66.2
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 9.8e-65 250.8 204 67.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.3e-64 250.4 192 67.7
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-64 250.4 180 73.3
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.3e-64 250.4 193 67.4
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.7e-64 250.0 180 69.4
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.2e-64 249.6 202 66.3
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.8e-64 249.2 192 69.8
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 3.7e-64 248.8 200 68.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 3.7e-64 248.8 197 68.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.7e-64 248.8 202 65.8
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 4.9e-64 248.4 197 68.5
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.9e-64 248.4 198 69.2
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 4.9e-64 248.4 173 72.3
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.9e-64 248.4 203 66.5
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 6.3e-64 248.1 205 62.9
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.3e-64 248.1 189 68.8
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.3e-64 248.1 189 68.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 8.3e-64 247.7 174 73.0
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 8.3e-64 247.7 202 65.8
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 8.3e-64 247.7 220 63.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 8.3e-64 247.7 173 73.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.1e-63 247.3 199 66.8
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.1e-63 247.3 204 64.7
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.1e-63 247.3 204 66.7
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.4e-63 246.9 200 64.0
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.4e-63 246.9 196 68.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.8e-63 246.5 199 65.3
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.8e-63 246.5 202 65.8
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.4e-63 246.1 198 68.7
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.4e-63 246.1 188 69.1
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.1e-63 245.7 180 71.7
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.1e-63 245.7 180 71.7
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.1e-63 245.7 181 70.7
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.4e-63 245.0 182 70.9
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 9.2e-63 244.2 180 67.8
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 9.2e-63 244.2 190 65.3
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.2e-62 243.8 204 66.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.2e-62 243.8 200 62.5
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.0e-62 243.0 197 62.9
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.0e-62 243.0 176 67.6
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.7e-62 242.7 206 65.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.5e-62 242.3 204 63.7
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 4.5e-62 241.9 188 68.1
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.9e-62 241.5 169 72.8
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 7.7e-62 241.1 189 64.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.7e-61 240.0 199 65.8
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 2.9e-61 239.2 199 67.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 5.0e-61 238.4 205 62.9
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.1e-60 237.3 196 64.3
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-60 236.9 203 62.6
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.9e-60 236.5 198 65.7
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.9e-60 236.5 198 65.7
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.5e-60 236.1 163 74.2
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 3.3e-60 235.7 182 68.7
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.3e-60 235.7 200 64.5
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.3e-60 235.7 201 65.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.3e-60 235.3 201 62.7
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.6e-60 235.0 182 67.6
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 9.5e-60 234.2 194 62.9
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.8e-59 232.6 157 75.8
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.6e-59 232.3 198 64.6
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 3.6e-59 232.3 183 66.1
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 8.0e-59 231.1 213 60.1
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.0e-59 231.1 194 63.9
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 8.0e-59 231.1 205 60.5
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.4e-58 230.3 180 65.0
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.8e-58 229.9 193 63.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.8e-58 229.9 174 66.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.3e-58 229.6 199 61.8
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.3e-58 229.6 196 62.8
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 3.0e-58 229.2 188 66.5
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 3.0e-58 229.2 192 63.0
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 3.0e-58 229.2 214 62.6
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 5.2e-58 228.4 202 61.9
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 6.8e-58 228.0 188 66.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.5e-57 226.9 184 63.6
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 6.4e-56 221.5 283 48.4
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.3e-56 221.1 209 58.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 8.3e-56 221.1 158 71.5
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.1e-55 220.7 202 57.9
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.0e-55 218.0 128 89.1
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 3.5e-54 215.7 198 58.1
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 3.5e-54 215.7 149 71.1
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 5.9e-54 214.9 192 62.0
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-52 210.7 188 62.2
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 7.3e-52 208.0 196 59.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.5e-49 200.3 170 68.2
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.1e-47 194.1 129 78.3
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 2.4e-47 193.0 152 67.8
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.0e-46 188.3 197 57.4
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.6e-43 180.3 171 56.1
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.2e-43 178.3 204 52.9
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.4e-42 177.2 122 73.8
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 7.5e-41 171.4 200 47.5
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.9e-40 169.5 118 71.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 8.3e-40 167.9 173 53.2
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.1e-38 163.3 201 50.2
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.5e-38 162.5 152 54.6
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 4.6e-38 162.2 103 76.7
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.3e-37 159.8 183 54.1
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 4.3e-36 155.6 108 76.9
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 5.2e-34 148.7 86 83.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.6e-33 146.4 170 47.6
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.9e-32 142.1 182 47.8
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.6e-30 135.6 151 47.7
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.9e-28 130.2 161 43.5
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 9.6e-28 127.9 104 66.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-22 110.9 172 42.4
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.1e-18 96.3 70 62.9
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 5.8e-17 92.0 57 73.7
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.7e-16 90.5 70 60.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 2.2e-16 90.1 125 47.2
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 3.8e-16 89.4 57 73.7
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.1e-15 85.1 211 35.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 5.6e-12 75.5 173 30.6
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.3e-11 74.3 73 52.1
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.6e-11 73.9 147 32.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.5e-09 67.4 56 57.1
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 3.4e-09 66.2 62 58.1
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.1e-07 61.2 40 77.5


User provided reference genes

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