Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.9e-35 150.2 70 100.0
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.6e-19 98.2 89 58.4
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.0e-18 96.3 115 49.6
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.0e-18 96.3 115 49.6
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-18 96.3 115 49.6
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-18 96.3 115 49.6
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-18 96.3 115 49.6
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.0e-18 96.3 115 49.6
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.9e-18 94.7 115 48.7
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.9e-18 94.7 115 48.7
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.9e-18 94.7 115 48.7
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.1e-17 92.8 114 47.4
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.4e-17 92.4 115 46.1
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.2e-17 91.3 115 47.0
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-17 91.3 115 47.0
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-17 91.3 115 47.0
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-17 91.3 115 47.0
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.5e-17 90.5 115 47.8
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 7.2e-17 90.1 115 48.7
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.2e-16 89.4 115 46.1
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-16 89.4 115 47.8
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.6e-16 89.0 115 47.0
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 2.7e-16 88.2 115 45.2
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 2.7e-16 88.2 115 45.2
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.7e-16 88.2 115 45.2
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.7e-16 88.2 115 45.2
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 4.7e-16 87.4 115 45.2
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 4.7e-16 87.4 112 49.1
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 4.7e-16 87.4 112 49.1
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 4.7e-16 87.4 112 49.1
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 4.7e-16 87.4 112 49.1
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 4.7e-16 87.4 112 49.1
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 4.7e-16 87.4 112 49.1
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 8.0e-16 86.7 115 44.3
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.0e-15 86.3 115 45.2
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.0e-15 86.3 115 45.2
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.0e-15 86.3 115 46.1
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.4e-15 85.9 106 49.1
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.4e-15 85.9 115 44.3
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.8e-15 85.5 116 45.7
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.3e-15 85.1 115 43.5
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.7e-15 83.6 116 44.8
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 6.7e-15 83.6 115 44.3
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-14 82.8 115 44.3
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.1e-14 82.8 114 44.7
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-14 82.8 114 44.7
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-14 82.8 114 44.7
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-14 82.8 114 44.7
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-14 82.8 114 44.7
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-14 82.4 110 45.5
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.0e-14 82.0 115 44.3
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 2.0e-14 82.0 114 44.7
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 3.3e-14 81.3 114 44.7
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 5.7e-14 80.5 142 38.0
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 5.7e-14 80.5 114 43.9
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.7e-14 80.5 114 43.9
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 9.7e-14 79.7 114 43.0
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 9.7e-14 79.7 114 43.9
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.3e-13 79.3 115 42.6
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.3e-13 79.3 115 42.6
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.3e-13 79.3 115 43.5
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.7e-13 79.0 114 43.0
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 3.7e-13 77.8 115 42.6
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 3.7e-13 77.8 121 39.7
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 4.8e-13 77.4 114 43.0
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.4e-12 75.1 116 41.4
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 2.4e-12 75.1 113 41.6
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 3.1e-12 74.7 114 41.2
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 7.0e-12 73.6 121 40.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-11 72.8 114 41.2
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 7.7e-11 70.1 86 46.5
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.0e-10 67.4 103 40.8
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 5.5e-09 63.9 62 56.5
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.2e-08 62.8 36 80.6
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.2e-08 62.8 36 80.6
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.2e-08 62.8 36 80.6
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.2e-08 62.8 36 77.8
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.2e-08 62.8 36 80.6
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 1.6e-08 62.4 36 80.6
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.6e-08 62.4 36 77.8
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 3.6e-08 61.2 36 77.8
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.6e-08 61.2 71 49.3
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-07 59.7 47 61.7
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.0e-07 59.7 69 49.3
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-07 59.3 34 79.4
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-07 59.3 34 79.4
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-07 59.3 34 79.4
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-07 59.3 34 79.4
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 2.3e-07 58.5 36 75.0
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 2.3e-07 58.5 36 75.0
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 2.3e-07 58.5 33 81.8
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 6.7e-07 57.0 50 58.0
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 6.7e-07 57.0 33 78.8
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.6e-06 55.1 34 70.6
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 3.3e-06 54.7 35 68.6
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.3e-06 54.7 33 75.8
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 5.7e-06 53.9 33 75.8
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 5.7e-06 53.9 71 42.3


User provided reference genes

Program Settings