Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 2345.5 1186 100.0
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 2332.4 1186 99.3
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 2235.3 1186 94.7
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2205.6 1203 92.5
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2143.6 1219 89.7
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 2143.6 1185 91.2
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1902.5 1201 80.2
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1875.9 1204 79.5
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1870.5 1201 79.0
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1851.3 1203 78.3
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1839.3 1201 77.4
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1833.5 1201 77.1
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1827.0 1200 76.6
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1823.1 1205 77.1
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1805.8 1201 75.7
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1804.6 1198 76.1
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1803.1 1204 76.2
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1801.2 1199 76.2
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1800.8 1203 76.1
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1793.9 1201 76.9
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1793.9 1287 72.9
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1783.8 1204 75.2
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1782.7 1286 72.2
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1782.7 1286 72.2
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1775.8 1200 75.4
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1773.8 1200 75.4
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1772.7 1197 75.2
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1771.1 1204 74.4
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1770.4 1201 75.1
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1763.0 1197 74.7
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1762.3 1201 74.4
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1755.7 1199 74.4
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1755.0 1293 70.1
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1753.8 1201 74.1
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1752.6 1202 73.9
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1751.5 1202 74.1
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1750.7 1198 74.2
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1748.4 1194 74.6
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1745.7 1199 73.6
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1744.6 1194 73.5
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1744.2 1201 73.6
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1740.7 1199 73.9
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1739.9 1188 73.7
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1739.9 1199 73.1
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1739.5 1197 74.3
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1737.6 1203 73.0
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1737.2 1204 73.3
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1733.8 1195 73.6
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1731.5 1195 73.6
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1731.1 1195 73.6
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1730.3 1195 73.6
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1729.9 1195 73.6
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1729.5 1210 72.5
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1724.5 1202 73.7
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1724.5 1219 71.9
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1723.8 1202 73.0
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1723.4 1195 73.4
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1720.3 1200 73.8
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1719.1 1219 72.0
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1713.7 1219 71.7
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1713.0 1197 72.5
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1712.2 1194 73.0
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1711.8 1194 73.1
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1710.3 1343 68.5
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1709.9 1196 72.3
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1709.1 1202 73.0
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1707.2 1202 72.6
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1702.6 1194 72.6
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1699.9 1197 72.6
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1699.1 1195 72.4
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1695.2 1196 72.2
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1692.9 1196 72.1
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1691.8 1195 72.1
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1691.4 1129 76.5
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1689.9 1199 72.4
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1687.2 1201 71.4
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1686.4 1195 72.1
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1676.4 1183 71.7
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1654.4 1208 69.3
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1647.9 1097 76.7
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1645.2 1199 70.6
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1644.4 1186 71.4
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1633.6 1206 70.9
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1619.0 1200 69.9
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1579.7 1212 67.1
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1573.1 1198 68.4
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1543.5 1192 66.1
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1515.7 1042 73.6
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1515.0 1043 73.4
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1504.2 1192 64.5
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1493.0 1012 75.2
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1488.0 1036 73.6
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1472.6 1207 63.0
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1441.4 1023 72.6
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1401.3 993 72.5
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1399.0 978 73.1
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1391.3 982 71.9
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1382.5 1052 66.7
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1348.6 897 77.0
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1292.7 827 78.2
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1278.1 934 70.9
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1268.1 1211 54.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1258.8 871 71.8
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1172.9 1225 51.4
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1095.1 903 63.1
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1078.9 1208 48.9
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 1.8e-306 1056.2 1209 48.5
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.7e-273 946.0 1185 45.0
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 2.2e-267 926.4 1325 41.6
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 7.4e-247 858.2 518 84.0
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.6e-244 849.7 1224 41.3
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.3e-227 794.3 1133 41.7
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 1.2e-188 664.8 424 79.7
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.6e-146 522.3 484 60.7
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.1e-144 518.8 737 42.7
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 2.1e-140 504.6 306 79.4
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 2.8e-137 494.2 324 75.0
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 8.1e-137 492.7 429 61.1
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.4e-127 460.7 323 69.3
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 2.1e-124 451.4 347 68.3
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 9.4e-117 426.0 292 75.0
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 2.8e-113 414.5 328 69.2
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.6e-100 372.1 309 62.8
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 4.8e-97 360.5 361 53.2
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 3.2e-85 321.2 292 53.8
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.0e-83 314.7 256 64.5
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 7.3e-77 293.5 384 46.1
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 2.1e-60 238.8 161 71.4
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 3.1e-59 235.0 262 51.1
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.6e-47 196.1 124 77.4
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 1.3e-46 193.0 116 76.7
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.5e-45 189.5 114 76.3
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.1e-44 185.7 138 62.3
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.4e-43 183.0 202 54.5
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.0e-43 180.3 163 57.1
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 3.5e-39 168.3 727 25.6
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.5e-37 162.9 256 40.2
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.4e-35 156.4 194 46.9
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 2.9e-33 148.7 162 52.5
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.0e-30 140.2 81 81.5
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.5e-26 126.3 162 43.2
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.8e-19 102.8 74 64.9
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 2.5e-16 92.4 59 72.9
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 4.6e-15 88.2 62 69.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.3e-13 81.6 220 31.8
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 5.7e-13 81.3 47 74.5
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.0e-11 73.9 48 64.6
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 5.9e-10 71.2 74 63.5
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 5.9e-10 71.2 74 63.5
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 7.6e-10 70.9 60 70.0
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 1.0e-09 70.5 55 61.8
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 2.2e-09 69.3 70 55.7
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 7.2e-08 64.3 38 73.7


User provided reference genes

Program Settings