Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 1.4e-240 835.9 428 100.0
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 4.9e-233 810.8 428 97.2
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 3.6e-228 794.7 428 95.1
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 3.5e-199 698.4 439 83.8
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 3.3e-181 638.6 440 77.7
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 4.8e-180 634.8 439 77.4
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 4.6e-175 618.2 460 74.1
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.1e-128 464.2 436 61.9
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 2.1e-119 433.3 440 56.4
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 1.6e-111 407.1 431 57.3
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 6.2e-111 405.2 410 56.3
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.7e-108 397.1 414 55.6
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 4.9e-108 395.6 439 54.4
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.3e-105 386.7 432 51.6
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.1e-105 385.6 427 51.5
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 6.6e-105 385.2 409 56.2
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 8.6e-105 384.8 432 53.5
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 8.6e-105 384.8 351 58.7
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.1e-104 384.4 427 51.8
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 1.9e-104 383.6 420 55.5
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.6e-104 382.1 427 51.5
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 2.1e-103 380.2 405 56.0
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 6.2e-103 378.6 419 54.7
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.0e-102 375.9 432 52.1
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 4.0e-102 375.9 400 56.0
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.0e-101 373.6 403 54.8
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 7.6e-101 371.7 403 54.1
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 7.6e-101 371.7 425 52.5
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 3.2e-99 366.3 392 55.9
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 5.4e-99 365.5 411 54.5
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 9.2e-99 364.8 432 52.3
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 6.0e-98 362.1 427 52.2
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.3e-96 356.3 413 54.0
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 2.1e-95 353.6 376 55.1
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 4.8e-95 352.4 415 52.3
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.4e-94 350.9 441 49.4
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 3.1e-94 349.7 425 50.6
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 9.0e-94 348.2 482 47.3
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 1.5e-93 347.4 427 49.6
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 2.0e-93 347.1 412 52.4
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 4.4e-93 345.9 417 51.6
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 9.9e-93 344.7 421 52.3
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 9.3e-91 338.2 356 54.8
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 1.6e-90 337.4 417 49.4
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 7.8e-90 335.1 401 50.1
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 9.6e-88 328.2 412 50.2
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 4.8e-87 325.9 421 49.9
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 6.2e-87 325.5 382 51.0
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 6.2e-87 325.5 407 49.6
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.1e-86 324.7 406 48.3
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 6.9e-86 322.0 405 51.6
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 1.5e-85 320.9 404 48.3
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 5.8e-85 318.9 410 49.8
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 9.9e-85 318.2 402 48.3
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.9e-84 315.8 415 50.8
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 8.4e-84 315.1 326 55.2
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 2.4e-83 313.5 655 36.3
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 9.3e-83 311.6 404 48.8
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.2e-82 311.2 430 48.1
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 2.7e-82 310.1 374 48.9
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 4.6e-82 309.3 405 46.9
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 6.0e-82 308.9 431 47.8
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.7e-81 305.4 299 58.5
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 5.6e-80 302.4 406 45.6
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 3.7e-79 299.7 320 53.8
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 1.5e-77 294.3 379 48.5
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 7.6e-77 292.0 273 60.8
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 7.6e-77 292.0 469 43.7
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 2.2e-76 290.4 348 53.4
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 6.4e-76 288.9 444 45.0
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 8.7e-73 278.5 289 55.4
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.5e-72 277.7 429 45.5
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 9.6e-72 275.0 417 43.9
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 2.1e-71 273.9 331 52.6
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 9.0e-70 268.5 442 46.2
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 2.6e-69 266.9 422 42.9
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 2.6e-69 266.9 436 43.1
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 5.8e-69 265.8 387 44.4
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 7.6e-69 265.4 352 49.4
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.2e-68 263.8 428 44.6
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 7.1e-67 258.8 289 53.6
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 9.3e-67 258.5 421 45.1
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 1.2e-66 258.1 373 46.9
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 2.3e-65 253.8 416 45.0
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 8.7e-65 251.9 335 49.0
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 4.3e-64 249.6 327 49.2
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 3.7e-63 246.5 412 41.0
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 3.0e-57 226.9 360 46.1
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 5.7e-56 222.6 405 43.2
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.7e-55 221.1 473 40.4
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 4.1e-54 216.5 305 46.6
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 4.5e-53 213.0 319 45.8
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 5.9e-53 212.6 256 48.8
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.7e-52 211.1 421 39.7
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.7e-52 211.1 321 45.8
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.2e-52 210.7 367 40.1
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 5.1e-49 199.5 360 41.7
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 2.7e-42 177.2 358 38.5
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 1.1e-40 171.8 373 37.8
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.8e-39 167.2 275 44.7
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 8.2e-39 165.6 335 40.3
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.8e-38 164.5 274 43.8
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 4.1e-38 163.3 335 40.6
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 7.0e-38 162.5 334 40.1
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 8.5e-36 155.6 346 37.6
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 1.1e-35 155.2 329 38.9
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 1.9e-35 154.5 329 39.2
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 2.5e-35 154.1 366 36.9
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 2.5e-35 154.1 366 36.9
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 5.5e-35 152.9 331 38.7
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.8e-33 147.9 335 38.2
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 4.0e-33 146.7 326 38.0
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 8.8e-33 145.6 338 38.8
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 3.4e-32 143.7 326 38.7
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 1.7e-31 141.4 316 37.7
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 4.8e-31 139.8 330 39.1
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 8.3e-31 139.0 360 36.4
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.1e-30 138.7 332 36.7
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 3.1e-30 137.1 331 35.0
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 3.1e-30 137.1 194 46.9
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 7.0e-30 136.0 330 38.8
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 3.5e-29 133.7 299 35.8
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 5.0e-28 129.8 125 56.0
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 3.4e-24 117.1 471 32.3
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.1e-22 112.1 292 33.9
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 1.4e-22 111.7 250 38.0
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 5.0e-20 103.2 417 31.2
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 2.5e-19 100.9 333 31.5
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 5.5e-19 99.8 158 45.6
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.3e-15 88.6 134 43.3
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 1.4e-14 85.1 216 38.4
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 2.4e-14 84.3 121 46.3
Dinv07115 Davidia involucrata HOM05D005141 ORTHO05D030953 1.9e-11 74.7 76 65.8
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 1.4e-09 68.6 104 38.5
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 2.3e-09 67.8 175 34.3
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 3.1e-09 67.4 69 49.3
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 2.6e-08 64.3 176 34.1
Lj7C714T1 Lonicera japonica HOM05D005141 ORTHO05D030953 9.8e-08 62.4 93 47.3
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 1.7e-07 61.6 176 34.1


User provided reference genes

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