Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 2119.4 1117 100.0
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 2082.0 1117 98.4
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1801.9 1120 83.1
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1720.3 1123 83.3
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1718.0 1133 82.8
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 0.0e+00 1338.6 922 78.4
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1307.4 1155 62.3
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1268.4 1145 61.2
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1240.7 1147 59.8
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1240.3 1152 59.9
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1236.9 1125 60.4
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1235.3 1148 59.1
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1233.4 1149 59.8
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1225.3 1126 59.7
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1212.2 1169 59.0
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1211.8 1149 59.4
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1208.0 1157 59.4
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1207.6 1180 57.5
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1206.4 1140 58.3
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1205.7 1145 58.6
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1198.0 1151 57.9
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1196.8 1156 60.1
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1194.5 1152 57.3
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1193.7 1130 58.2
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1193.3 1152 58.9
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1191.4 1146 58.6
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1189.5 1139 57.9
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1188.7 1151 58.4
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1182.5 1150 57.1
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1181.0 1151 57.0
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1172.5 1151 56.4
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1168.7 1153 56.3
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1166.8 1143 57.1
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1166.4 1152 57.6
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1156.7 1142 56.9
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1150.6 1145 56.1
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1149.8 1153 57.2
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1146.0 1150 56.1
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1145.2 1144 55.2
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1144.8 1141 55.7
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1143.3 1140 56.3
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1141.7 1141 55.7
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1136.7 1152 56.0
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1135.6 1179 55.1
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1134.8 1179 54.7
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1132.5 1154 55.5
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1129.0 1147 55.0
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1126.7 1146 55.9
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1123.2 1157 56.0
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1123.2 1040 59.5
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1122.8 1147 56.3
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1122.1 1151 56.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1121.3 1157 55.9
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1108.2 1106 56.4
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1106.7 1139 56.0
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1105.9 1152 54.7
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1104.4 1216 52.6
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1102.4 1145 55.4
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1096.6 1146 56.1
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1096.3 1155 53.9
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1095.5 1140 56.1
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1094.3 1159 53.8
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1089.7 1156 54.0
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1089.7 1022 58.2
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1087.0 1156 54.2
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1081.6 1121 55.3
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1080.5 1150 53.6
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 7.6e-312 1073.5 1141 53.4
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 1.0e-306 1057.0 1129 54.4
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 2.8e-304 1048.9 939 60.4
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 1.8e-303 1046.2 1116 55.6
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 2.9e-301 1038.9 1105 54.8
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 3.0e-298 1028.9 1156 52.7
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 1.9e-297 1026.2 1134 53.3
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 6.4e-293 1011.1 1158 52.1
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 1.1e-292 1010.4 1122 52.2
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 1.1e-292 1010.4 1137 52.4
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.4e-292 1009.2 1167 49.9
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 7.8e-291 1004.2 1125 52.1
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 3.0e-290 1002.3 1132 52.2
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 3.4e-286 988.8 1131 53.0
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 1.7e-285 986.5 1132 51.9
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 2.9e-285 985.7 1133 51.6
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 2.4e-284 982.6 1142 49.6
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 3.9e-282 975.3 1126 51.1
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 5.1e-282 974.9 1126 51.1
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 1.5e-281 973.4 1130 50.3
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 1.1e-279 967.2 1133 50.2
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 1.1e-279 967.2 1133 50.2
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 1.4e-279 966.8 1131 50.3
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 4.0e-279 965.3 1136 49.8
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 1.4e-271 940.3 931 56.4
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 2.6e-262 909.4 1057 51.5
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.2e-253 879.8 1144 46.1
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 5.1e-250 868.6 1159 46.2
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 1.2e-238 830.9 964 51.9
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 9.4e-228 794.7 1003 49.3
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 4.5e-214 749.2 581 66.6
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 6.8e-202 708.8 1191 40.2
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 3.0e-197 693.3 1174 38.9
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 7.6e-193 678.7 1133 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.6e-174 617.8 1209 35.2
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 4.8e-139 500.0 452 60.6
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 5.9e-137 493.0 490 56.1
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.6e-129 468.4 653 45.8
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 5.9e-129 466.5 584 51.5
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 2.7e-118 431.0 1202 30.8
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 4.5e-113 413.7 499 48.1
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 4.7e-110 403.7 201 97.0
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 2.8e-102 377.9 1143 29.1
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 3.6e-94 350.9 363 57.0
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 4.4e-76 290.8 341 48.7
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 3.0e-72 278.1 576 37.0
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 1.3e-62 246.1 1130 25.2
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 3.1e-61 241.5 392 41.1
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 6.7e-56 223.8 235 52.8
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 1.9e-55 222.2 113 89.4
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.1e-47 196.4 105 85.7
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.7e-17 95.5 65 64.6
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.3e-16 92.4 102 52.9
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 5.2e-16 91.3 59 67.8
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 1.5e-15 89.7 101 54.5
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 4.4e-07 61.6 85 50.6
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 1.7e-06 59.7 57 54.4


User provided reference genes

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