Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.6e-121 439.5 225 100.0
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 1.5e-108 396.4 230 90.9
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.5e-103 379.8 230 86.1
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 3.9e-80 302.0 237 78.5
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 7.8e-65 251.1 227 67.4
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 4.6e-49 198.7 217 54.8
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.7e-43 180.3 168 64.3
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 4.9e-43 178.7 224 53.6
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 7.4e-39 164.9 220 52.3
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.3e-38 164.1 220 51.8
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.2e-36 157.5 195 54.9
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 2.9e-35 152.9 226 50.9
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 3.8e-35 152.5 212 48.6
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.2e-33 147.5 195 50.8
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 2.7e-33 146.4 194 52.6
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 3.9e-32 142.5 227 46.3
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.3e-31 139.0 161 49.1
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 3.7e-30 136.0 200 49.0
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 3.7e-30 136.0 156 53.8
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 4.8e-30 135.6 195 46.2
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 6.3e-30 135.2 194 46.9
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.1e-29 134.4 196 49.0
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-29 134.4 167 49.7
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 1.4e-29 134.0 135 54.1
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.8e-29 133.7 147 52.4
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.1e-29 132.9 182 53.3
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 3.1e-29 132.9 220 50.9
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 4.1e-29 132.5 161 47.8
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 5.3e-29 132.1 202 46.0
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.3e-29 132.1 156 51.3
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 6.9e-29 131.7 213 43.2
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 6.9e-29 131.7 205 48.8
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.9e-29 131.7 198 46.0
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 9.0e-29 131.3 166 48.2
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.5e-28 130.6 195 45.6
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.0e-28 130.2 162 49.4
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 2.6e-28 129.8 185 45.9
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.6e-28 129.8 153 51.6
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 4.5e-28 129.0 195 46.2
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.3e-27 127.5 173 46.8
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.3e-27 127.5 173 46.8
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.1e-26 124.4 160 50.6
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.1e-26 124.4 163 47.2
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.4e-26 124.0 205 42.9
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.9e-26 123.6 150 46.7
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.5e-26 123.2 186 45.7
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 3.2e-26 122.9 213 45.1
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.2e-25 120.9 206 44.2
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-25 120.9 164 47.6
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.2e-25 120.9 216 45.4
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.6e-25 120.6 162 48.1
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 2.1e-25 120.2 210 43.8
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 4.6e-25 119.0 135 49.6
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 6.1e-25 118.6 156 47.4
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 7.9e-25 118.2 199 42.7
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.4e-24 117.5 158 46.8
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.3e-24 116.7 165 45.5
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 3.9e-24 115.9 201 43.8
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 5.1e-24 115.5 225 42.7
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 2.0e-23 113.6 177 44.6
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 2.0e-23 113.6 214 38.3
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 2.5e-23 113.2 214 42.5
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 3.3e-23 112.8 152 46.1
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 3.3e-23 112.8 181 43.1
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 4.3e-23 112.5 151 46.4
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 7.4e-23 111.7 194 40.7
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 7.4e-23 111.7 158 46.2
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.3e-22 110.9 147 50.3
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 4.8e-22 109.0 191 41.9
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 6.3e-22 108.6 191 45.5
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 8.2e-22 108.2 177 42.9
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.4e-21 107.5 209 37.8
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.8e-21 107.1 198 42.4
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.8e-21 107.1 165 42.4
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.4e-21 106.7 188 40.4
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 6.9e-21 105.1 171 39.8
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 9.1e-21 104.8 217 38.7
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.5e-20 104.0 191 47.6
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.0e-20 103.6 163 42.3
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 5.9e-20 102.1 149 43.6
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 5.9e-20 102.1 182 41.2
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 7.7e-20 101.7 164 43.9
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 1.3e-19 100.9 206 39.8
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.3e-19 100.9 195 45.6
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-19 100.5 179 43.0
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 2.2e-19 100.1 152 40.8
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 2.2e-19 100.1 152 40.8
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 2.9e-19 99.8 189 42.3
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.9e-19 99.8 189 42.3
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.8e-19 99.4 162 42.0
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 5.0e-19 99.0 156 42.9
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 5.0e-19 99.0 185 44.3
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 8.5e-19 98.2 193 36.3
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 8.5e-19 98.2 153 40.5
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 8.5e-19 98.2 209 38.3
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.1e-18 97.8 148 42.6
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.4e-18 97.4 153 41.8
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.4e-18 97.4 182 40.1
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.5e-18 96.7 209 37.8
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 4.2e-18 95.9 154 40.9
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 4.2e-18 95.9 163 41.7
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 5.5e-18 95.5 184 37.5
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 5.5e-18 95.5 186 44.1
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 7.2e-18 95.1 171 38.6
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 7.2e-18 95.1 150 40.0
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.7e-17 93.2 191 37.2
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 2.7e-17 93.2 168 38.7
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 2.7e-17 93.2 168 38.7
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.6e-17 92.8 154 41.6
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.6e-17 92.8 195 39.5
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 6.1e-17 92.0 158 40.5
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 6.1e-17 92.0 187 39.0
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 6.1e-17 92.0 187 39.0
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 7.9e-17 91.7 172 34.9
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 7.9e-17 91.7 196 38.3
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 1.8e-16 90.5 147 40.1
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.0e-16 89.7 181 39.2
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 3.0e-16 89.7 152 41.4
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 8.8e-16 88.2 164 37.2
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.1e-15 87.8 164 37.2
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.5e-15 87.4 224 33.9
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.3e-15 86.3 158 39.2
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.3e-15 86.3 146 41.1
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 5.7e-15 85.5 164 36.6
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 7.4e-15 85.1 137 44.5
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.3e-14 84.3 129 46.5
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 2.8e-14 83.2 164 37.2
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 1.4e-13 80.9 174 42.0
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.8e-13 80.5 189 34.9
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.1e-13 79.3 158 35.4
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.1e-13 79.3 189 34.9
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 2.6e-12 76.6 217 32.7
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 3.8e-11 72.8 156 36.5
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 1.1e-10 71.2 207 30.9
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 7.2e-10 68.6 201 36.8
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.2e-09 67.8 201 35.8
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 2.7e-09 66.6 206 30.6
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 3.6e-09 66.2 140 37.1
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 6.7e-08 62.0 147 36.1
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-07 60.8 176 34.7
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 9.7e-07 58.2 134 35.1
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.7e-06 57.4 190 31.1
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 3.7e-06 56.2 132 35.6
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 4.8e-06 55.8 143 32.9
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 8.2e-06 55.1 143 32.2


User provided reference genes

Program Settings